BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901275
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34470.2 | Symbols: UREG, PSKF109 | urease accessory protein... 1419 0.0
AT2G34460.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 104 1e-21
> AT2G34470.2 | Symbols: UREG, PSKF109 | urease accessory protein
G | chr2:14530735-14532505 REVERSE LENGTH=1090
Length=1090
Score = 1419 bits (768), Expect = 0.0
Identities = 815/837 (97%), Gaps = 6/837 (1%)
Strand=Plus/Plus
Query 1 ATGGCATCACACGACCACcatcatcatcatcatcatcacgatcatGAGCATGGCCACGAT 60
||||||||||||| |||| | |||||||||||||||||||||||||||| |||||||
Sbjct 95 ATGGCATCACACG---ACCA-C--CATCATCATCATCACGATCATGAGCATGACCACGAT 148
Query 61 AGGAAATCGGACGGCGGAGAAGGGAAGTCGTCGTGGGTGGGGAAGGACGGGAAGGTGTAC 120
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 149 AGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGGGAAGGTGTAC 208
Query 121 CATAGCCACGATGGACTGGCACCTCACTCACACGAACCCATCTACTCTCCTGGCTACTTC 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 CATAGCCACGATGGACTCGCACCTCACTCACACGAACCCATCTACTCTCCTGGCTACTTC 268
Query 181 AGTCGCCGAGCTCCTCCGCTTAACGACCGTAACTTCTCCGAGAGAGCTTTTACCGTCGGT 240
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 269 AGTCGCCGAGCTCCTCCGCTTCACGACCGTAACTTCTCTGAGAGAGCTTTTACCGTCGGT 328
Query 241 ATTGGCGGCCCCGTTGGCACTGGGAAAACGGCATTGATGCTTGCTCTTTGTAGATTCTTG 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 ATTGGCGGTCCCGTTGGCACTGGGAAAACGGCATTGATGCTTGCTCTTTGTAGATTCTTG 388
Query 301 AGGGACAAATATAGTCTTGCTGCTGTGACAAATGATATATTCACGAAAGAGGACGGTGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 389 AGGGACAAATATAGTCTTGCTGCTGTGACAAATGATATATTCACGAAAGAGGATGGTGAG 448
Query 361 TTCCTGGTGAAGAATGGGGCTCTTCCTGAGGAAAGGATTAGAGCTGTTGAAACTGGTGGA 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 449 TTTCTGGTGAAGAATGGGGCTCTTCCTGAGGAAAGGATTAGAGCTGTTGAAACAGGTGGA 508
Query 421 TGTCCACACGCTGCCATCCGTGAAGATATCAGTATCAATTTGGGTCCTCTTGAGGAGTTA 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 TGTCCACACGCTGCTATCCGTGAAGATATCAGTATCAATTTGGGTCCTCTTGAGGAGTTA 568
Query 481 TCTAACTTATTCAAGGCTGATTTGCTTCTTTGTGAATCCGGTGGAGATAATTTAGCTGCT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 TCTAACTTATTCAAGGCTGATTTGCTTCTTTGTGAATCCGGTGGAGATAATTTAGCTGCT 628
Query 541 AATTTCAGTAGAGAACTAGCTGACTATATCATCTACATCATCGATGTATCGGCTGGTGAT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 AATTTCAGTAGAGAACTAGCTGACTATATCATCTACATCATCGATGTATCGGCTGGTGAT 688
Query 601 AAAATACCCCGTAAAGGCGGCCCTGGAATCACTCAAGCTGATCTTCTGGTGATAAACAAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 AAAATACCCCGTAAAGGCGGCCCTGGAATCACTCAAGCTGATCTTCTGGTGATAAACAAG 748
Query 661 ACAGACCTTGCAGCAGCTGTTGGGGCTGACTTATCTGTCATGGAAAGGGATGCACTACGC 720
|| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 749 ACTGACCTTGCAGCAGCTGTTGGGGCTGACTTATCGGTCATGGAAAGGGATTCACTACGC 808
Query 721 ATGCGTGATGGAGGGCCATTTGTCTTTGCTCAGGTGAAGCATGGGCTTGGGGTCGAGGAA 780
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 809 ATGCGTGATGGAGGGCCATTTGTCTTTGCTCAGGTGAAGCATGGGCTTGGAGTCGAGGAA 868
Query 781 ATCGTGAACCATGTCATGCACTCATGGGAACATGCGACTGGGAAGAAGCGCCAGTGA 837
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 869 ATCGTGAACCATGTCATGCACTCATGGGAACATGCGACCGGGAAGAAGCGCCAGTGA 925
> AT2G34460.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr2:14529608-14530958 FORWARD LENGTH=1096
Length=1096
Score = 104 bits (56), Expect = 1e-21
Identities = 58/59 (98%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 779 AAATCGTGAACCATGTCATGCACTCATGGGAACATGCGACTGGGAAGAAGCGCCAGTGA 837
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1096 AAATCGTGAACCATGTCATGCACTCATGGGAACATGCGACCGGGAAGAAGCGCCAGTGA 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40790127364
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5