BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg901286

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G34580.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Herpesvir...   610    3e-174


> AT2G34580.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Herpesvirus 
UL139, cytomegalovirus (InterPro:IPR021042); Has 30201 
Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; 
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 
| chr2:14565660-14567673 REVERSE LENGTH=990
Length=990

 Score =  610 bits (330),  Expect = 3e-174
 Identities = 397/430 (92%), Gaps = 2/430 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGCTTTCTTCAGCTTTCAAGGAGAGACTCGATCAAATGGAGTTCACCAGAAACCAA  60
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  34   ATGGCGCTTTCTTCAGCTTTCAAGGAGAGGCTCGATCAAATGGAGTTCACCAGAAACCAA  93

Query  61   CGACTCGATCTTCTCCAGGCGGAGAAAGAGTTACAAGTGAACAAATCACAGATTTTAGCA  120
            |||||| ||||||||||||||||||||||  |||||||||||||| ||||||||||||||
Sbjct  94   CGACTCAATCTTCTCCAGGCGGAGAAAGAACTACAAGTGAACAAAGCACAGATTTTAGCA  153

Query  121  TCGAAGCACACAAGTATACAATCCATAGAACGCAGATGTTTGATACTCGACCAAAAAATT  180
            ||||||||| ||| |||||||||||| ||||||||||||||||| || || || ||||| 
Sbjct  154  TCGAAGCACGCAACTATACAATCCATTGAACGCAGATGTTTGATGCTAGAACAGAAAATA  213

Query  181  GCTGCACAAAACCTCAAGATCACAGTTCTCAAATCTAACATCGAAGATCTCGATTCCAAA  240
            || ||||||||||| ||||||||| |||||| |||||||||||| |||||||| ||||||
Sbjct  214  GCAGCACAAAACCTGAAGATCACAATTCTCAGATCTAACATCGATGATCTCGACTCCAAA  273

Query  241  TACCACGGCTCTATACAACAGTTGAGGAGC-CTGAAGAGTGAGGTTGAAGAGCTGAGAGA  299
            |||||| ||| ||||||||| ||||||| | ||||||| ||||||||| ||||||| |||
Sbjct  274  TACCACAGCTATATACAACAATTGAGGA-CACTGAAGATTGAGGTTGAGGAGCTGAAAGA  332

Query  300  GTTAGACGAAGAAAGGGACAAGTATTACAAGGTGAAATGTTCAGAGATGAATGAGTTTAT  359
            |||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  333  GTTAGATGAAGAGAGGGAGAAGTATTACAAGGTGAAATGTTCAGAGATGAATGAGTTTAT  392

Query  360  GCAAAATGTTGAGAGGTTTAGATCAGAGAACCGGGTACAAATCGAGAACCTGAGAAACCG  419
            |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct  393  GCAAAATGTTGAGAGGTTTAGATCAGAGAACCGGTTACAAATCGAGAACCTGCGAAACCG  452

Query  420  AATCAAAGAG  429
            |||||| |||
Sbjct  453  AATCAAGGAG  462



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20961651333


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5