BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901307
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34740.1 | Symbols: | Protein phosphatase 2C family protein... 1050 0.0
> AT2G34740.1 | Symbols: | Protein phosphatase 2C family protein
| chr2:14658684-14660305 FORWARD LENGTH=1066
Length=1066
Score = 1050 bits (568), Expect = 0.0
Identities = 662/706 (94%), Gaps = 11/706 (2%)
Strand=Plus/Plus
Query 1 ATGG-AGTACTACATCGTAGCTGATACCAAAACCGTTAAAGGCCACAATCTTGGGTTATA 59
|||| || ||| |||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 347 ATGGAAG-ACTTCATCGTGGCTGACACCAAAACCGTTAAAGGCCACAATCTTGGGTTATA 405
Query 60 CGCTATATTCGACGGCCACTCAGGCATTGATGTTGCGGATTATTTGCATAACCATCTATT 119
|||||||||||||||||||||||||| |||||||||||||||| |||| |||||||| ||
Sbjct 406 CGCTATATTCGACGGCCACTCAGGCAGTGATGTTGCGGATTATCTGCAGAACCATCTCTT 465
Query 120 TGATAACATATTGAGTCAGCCGGATTTTTGGAGAAACCCTAAGAAGGCAATCAAGAGAGC 179
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 466 TGATAACATCTTGAGTCAGCCGGATTTTTGGAGAAACCCTAAGAAGGCAATCAAAAGAGC 525
Query 180 GTATAAATCTACGGACGACTACATTCTCCATAACATAGTTGGTCCACGAGGTGGCTCCAC 239
||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||||
Sbjct 526 GTATAAATCTACGGACGACTACATTCTTCAAAACGTGGTTGGTCCACGAGGTGGCTCCAC 585
Query 240 TGCTGTGACGGCTATAGTAATTAATGGTAAGACAACTGTGATTGCAAACGTTGGAGATTC 299
||||||||||||||||||||| |||| |||| || |||| |||||||||||||||||||
Sbjct 586 GGCTGTGACGGCTATAGTAATTGATGGGAAGAAAATTGTGGTTGCAAACGTTGGAGATTC 645
Query 300 AAGAGCAATCTTGTGTCGTGCAAGTGATGTAGTCAAACAAATTACGGTTGATCACGAACC 359
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 646 AAGAGCAATCTTGTGTCGTGAAAGTGATGTAGTCAAACAAATTACGGTTGATCACGAACC 705
Query 360 TGACAAC---------CTTGTCGAGAGCAAAGGCGGCTTCGTCTCCCAAAAGCCAGGTAA 410
|||||| |||||| |||||||||||||||| ||||||||||||||||| ||
Sbjct 706 TGACAAAGAGAGAGATCTTGTCAAGAGCAAAGGCGGCTTTGTCTCCCAAAAGCCAGGCAA 765
Query 411 TGTTCCGAGAGTGGATGGACAACTAGCGATGTCGCGCGCGTTTGGAGACGGAGGCCTTAA 470
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 766 TGTTCCGAGAGTGGATGGACAACTAGCGATGACGCGTGCGTTTGGAGACGGAGGCCTTAA 825
Query 471 AGAGCATATAAGTGTGAGACCGAACATAGAGATTGTCGAGATCCACGATGACACAAAGTT 530
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 826 AGAGCATATAAGTGTGATCCCGAACATAGAGATTGCCGAGATCCACGATGACACAAAGTT 885
Query 531 CTTGATCTTGGCTAGCGATGGACTCTGGAAGGTGATGTCGAACGACGAGGTTTGGCATCA 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 886 CTTGATCTTGGCTAGCGATGGACTCTGGAAGGTGATGTCGAACGACGAGGTTTGGGATCA 945
Query 591 AATCAAAAAGAGAGGGAATGCAGAAGAAGCTGCGAAAACGCTAATTGATAAAGCGTTGGC 650
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 946 AATCAAAAAGAGAGGGAATGCAGAAGAAGCTGCGAAAATGCTAATTGATAAAGCCTTGGC 1005
Query 651 TAGAGGAAGTAAAGATGATATCTCTTGTGTTGTTGTTTCTTTTCTT 696
|||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1006 TAGAGGAAGTAAAGATGATATCTCTTGTGTTGTTGTTTCTTTCCTT 1051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34912732165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5