BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901315
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34820.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1332 0.0
> AT2G34820.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:14689624-14690879 FORWARD
LENGTH=1169
Length=1169
Score = 1332 bits (721), Expect = 0.0
Identities = 828/880 (94%), Gaps = 5/880 (1%)
Strand=Plus/Plus
Query 1 ATGTCCATGGACTGCTTAAGCTACTTCTTTAACTACGATCCACCTGTCCAGCTCCGGGAT 60
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 9 ATGTCCATGGATTGCTTAAGCTACTTCTTTAACTACGATCCTCCTGTCCAGCTCCAGGAT 68
Query 61 TGCTTTATCCCCGAAATGGATATGATTATCCCTGAAACCGACAGTTTCCTCTTCCAATCT 120
|||||||| ||||| |||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 69 TGCTTTATTCCCGAGATGGATATGATTATCCCTGAAACCGATAGTTTCTTCTTCCAATCT 128
Query 121 CTACCGCAACTGGAGTTTCATCAGCCATTGTTTCAAGAAGAAGCTCCTTCACAGACCCAC 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 CAACCGCAACTGGAGTTTCATCAGCCATTGTTTCAAGAAGAAGCTCCTTCACAGACCCAC 188
Query 181 TTTGACCCTTTTTGCGACCAGTTTCTTTCTCCCCAAGAAATCTTTCTCCCTAACCCTAAA 240
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 189 TTTGACCCTTTCTGCGACCAGTTTCTTTCTCCGCAAGAAATCTTTCTCCCTAACCCTAAA 248
Query 241 ACCGAAATCTTCAACGAAACACACGACCTAGATTTCTTACTCCCCACGCCAAAACGCCAG 300
| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 249 AACGAAATCTTCAACGAAACACACGACCTCGATTTCTTTCTCCCCACGCCAAAACGCCAG 308
Query 301 AAACTTGTTAACTCGAGCTACCATTGTAACAACACCCACAACCATTTCCAGAGCCATAAC 360
| |||||||||||| |||||| ||||| ||||| || |||||||||||||||| ||||
Sbjct 309 AGACTTGTTAACTCCAGCTACAATTGT---AACACTCAAAACCATTTCCAGAGCCGTAAC 365
Query 361 CCGAATTTCTTCGACCCTTTCGGCGAC-CTTGATTTTGTTCCAGAAGCTTCTACCTTCCC 419
||||||||||||||||||||||||||| | |||||| ||||||||| ||| ||||||||
Sbjct 366 CCGAATTTCTTCGACCCTTTCGGCGACAC-TGATTTCGTTCCAGAATCTTGTACCTTCCA 424
Query 420 GGAGTTTCGAGTTCCGGATTTCTCTTTAGCGTTCAAGGTAGGCCGAGGAGATCAAGACGA 479
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 425 GGAGTTTCGAGTTCCGGATTTCTCTTTAGCTTTCAAGGTAGGCCGGGGAGATCAAGATGA 484
Query 480 CACCAAGAAACCGACGCTTTCATCTCAGAGCATCGCGGCTCGAGAAAGGAGAAGAAGAAT 539
| | |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 485 CTCAAAGAAACCGACGCTTTCATCTCAGAGCATCGCGGCTAGAGGGAGGAGAAGAAGAAT 544
Query 540 TGCGGAGAAGACTCACGAGCTCGGAAAACTCATCCCCGGTGGCCAGAAACTTAACACCGC 599
||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 545 TGCAGAGAAGACTCACGAGCTCGGAAAACTCATCCCCGGTGGCAATAAACTTAACACCGC 604
Query 600 CGAGATGTTTCAAGCCGCCGCTAAGTATGTCAAGTTCTTGCAGAGTCAAGTTGGGATTCT 659
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 605 CGAGATGTTCCAAGCCGCCGCTAAGTATGTCAAGTTTTTGCAGAGTCAAGTTGGGATTCT 664
Query 660 CCAACTGATGCAGACCACGAAGAAGGGTAGCTCTAATGTGCAAATGGAAACTCGGTTTTT 719
|||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||
Sbjct 665 CCAACTGATGCAGACCACAAAGAAGGGTAGCTCTAATGTGCAAATGGAAACTCAGTATTT 724
Query 720 GCTTGAATCGCAAGCAGTCCAGGAGAAGCTATCAACAGAGGAAGTGTGTTTGGTACCGTG 779
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 725 GCTTGAATCGCAAGCAATCCAGGAGAAGTTATCAACAGAGGAAGTGTGTTTGGTACCGTG 784
Query 780 TGAAATGGTTCAAGATCTAACAACTGAAGAAACCATTTGGAAAAACCCTAATATTTCTCG 839
||||||||||||||||||||||||||||||||||||||| | || ||| |||||||||||
Sbjct 785 TGAAATGGTTCAAGATCTAACAACTGAAGAAACCATTTGCAGAACCCCGAATATTTCTCG 844
Query 840 AGAGATCAACAAGTTACTGTCTAAAGATCTGGCTAACTAG 879
||| ||||||||||||||||||||| ||||||||||||||
Sbjct 845 AGAAATCAACAAGTTACTGTCTAAACATCTGGCTAACTAG 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5