BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901330
Length=2340
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34880.1 | Symbols: MEE27, PKDM7C | Transcription factor jum... 2012 0.0
> AT2G34880.1 | Symbols: MEE27, PKDM7C | Transcription factor jumonji
(jmj) family protein / zinc finger (C5HC2 type) family
protein | chr2:14711880-14716634 REVERSE LENGTH=2421
Length=2421
Score = 2012 bits (1089), Expect = 0.0
Identities = 1510/1706 (89%), Gaps = 57/1706 (3%)
Strand=Plus/Plus
Query 35 ACAAGGACACTAATGTAGAATCTCCTAGTAGTCCGCGTCATCGGGAGATTCTTGCTAGAT 94
|||||| ||||||||||||| |||||||||||||| ||||| | || ||||||||||||
Sbjct 83 ACAAGGGCACTAATGTAGAACCTCCTAGTAGTCCGTATCATCCGAAGGTTCTTGCTAGAT 142
Query 95 GGGATCCGGCTGATGCAAAGAGGCCAGACATTGGTGAAGCTCCAGTATTCCACCCTACAT 154
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 GGGATCCGGCTAATGAAAAGAGGCCAGACATTGGTGAAGCTCCAGTATTCCACCCTACAT 202
Query 155 CAGAGGAGTTTGAAGATACACTTGCTTACATAGAAAAGATACGTCCCTTAGCTGAATCAT 214
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 203 CAGAGGAGTTTGAAGATACGCTTGCTTACATAGAAAAAATACGTCCCTTAGCTGAATCAT 262
Query 215 TTGGTATTTGTCGAATCGTGCCACCATCGAATTGGTCTCCTCCTTGTCGGCTTAAAGAGA 274
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
Sbjct 263 TTGGTATTTGTCGAATCGTGCCACCGTCGAATTGGTCTCCTCCTTGCCGGCTTAAAGGGG 322
Query 275 AAAGTATATGGAAGGATACAAAGTTCCCAACCCGTATTCAGATTGTTGACCTGCTACAGA 334
| |||||||||||| ||| ||| |||||||||||| ||||| ||||||||||||| ||||
Sbjct 323 ATAGTATATGGAAGAATAAAAATTTCCCAACCCGTGTTCAGTTTGTTGACCTGCTTCAGA 382
Query 335 ACAGA-GAGCCCATgaagaagaagaagaaacctaagggaaggaaacggaaacgtggaaga 393
||||| || ||| | ||||||||||| |||||| ||||||||||||||||| |||| |
Sbjct 383 ACAGAGGA-CCC--G-TGAAGAAGAAGACACCTAAAGGAAGGAAACGGAAACGAGGAA-A 437
Query 394 a-actcaagaacCGTCGCCTCCAAGAAACGATATGGCTCTGTATCTCGTTCTGTTTCCT- 451
| ||||||||||||||||| ||||||||||| |||||||||| ||| || |||| ||
Sbjct 438 ATACTCAAGAACCGTCGCCCCCAAGAAACGAAATGGCTCTGTTTCTAAATCAGTTT-CTA 496
Query 452 CACCCAAGACGACCGAAGAAGAGACA-TTTGGTTTC-AACTCTGGTTCAG-ATTTCACTC 508
| |||||| ||||||||||||||| | ||||||||| || |||||| ||| |||| ||||
Sbjct 497 CCCCCAAGGCGACCGAAGAAGAGA-ATTTTGGTTTCGAA-TCTGGTCCAGAATTT-ACTC 553
Query 509 TTGAGGACTTTGAGAAATACGCTCGATACTTCAAAGACTATTACTTTGGAAGAAAAGACA 568
||||| | |||||||||||||||| | | |||||||||| ||||||| |||||||||||
Sbjct 554 TTGAGAAGTTTGAGAAATACGCTCAAGATTTCAAAGACTCCTACTTTGAAAGAAAAGACA 613
Query 569 ATGCTGGAGATACAGAATGGACTCCAACTGTTGAGGAGATCGAAGGAGAGTACTGGAGGA 628
||| | | | | || |||| ||||||||||||||||||||||||||||||| |
Sbjct 614 ATG-T-----T---GGA--GA-TCCATCTGTTGAGGAGATCGAAGGAGAGTACTGGAGAA 661
Query 629 TCATTGAGCAACCAACAGATGAAGTCGAGGTATCT-TATGGCG-CTGATTTGGAGAA-CA 685
|||||||| || |||| ||||||| |||||| | ||||| | | ||||||||||| |
Sbjct 662 TCATTGAGAAAGAAACAAATGAAGTTAAGGTAT-TGTATGG-GACGGATTTGGAGAATCC 719
Query 686 GAGTACTTGGAAGTGGATTT-TACAAGAGAGGG--GACATGAAAACCGGAAGAAGCGATA 742
| |||||||||| || ||| | ||| || ||| | || |||| |||||| ||||
Sbjct 720 CA-TACTTGGAAGCGG-TTTCTCCAA-AG-GGGTAAAAATTCCAACCAGAAGAAATGATA 775
Query 743 TGGATCCATACATAGCTTCAGGTTGGAACTTGAACAACCTAC-CGAGGCTCCCTGGCTCG 801
||||| ||||||| |||| |||||||| ||||||||||| | | | || | || ||
Sbjct 776 TGGATAAATACATATCTTCTGGTTGGAATTTGAACAACCT-CGCCCGTCTGCAGGGATC- 833
Query 802 T-TACTGTCATTCGAGGATTCTCATATTTCTGGTGTTCTCGTGCCATGGTTGTACATTGG 860
| |||| || || ||||||| | | || || || |||| ||||||||| | || | ||
Sbjct 834 TCTACTATCCTTTGAGGATTGTGAGATCTCAGGGGTTCAGGTGCCATGGCTCTATGTGGG 893
Query 861 CATGTGCTTTTCAACGTTTTGTTGGCATGTCGAGGACAATCATCTATACTCACTGAACTA 920
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 894 CATGTGCTTTTCAACGTTTTGTTGGCATGTTGAGGACAATCATCTATATTCACTGAACTA 953
Query 921 TCATCACTTTGGCGAGCCAAAAGTATGGTACGGAGTTCCCGGAAGCCATGCAACTGGGCT 980
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 954 TCATCACTTTGGCGAGCCAAAAGTATGGTACGGAGTTCCGGGAAGCCATGCAACTGGGCT 1013
Query 981 AGAGAAGGCGATGAGAAAACATCTACCAGATTTGTTCGATGAACAACCTGATCTACTTCA 1040
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 AGAGAAGGCAATGAGAAAACATCTACCAGATTTGTTCGATGAACAACCTGATCTACTTCA 1073
Query 1041 TGAACTAGTTACTCAGTTTTCTCCAA-GCATTTTGAAAGATGAGGGAGTCCCGGTTTATC 1099
|||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct 1074 TGAACTGGTTACTCAGTTTTCTCCAACG-ATTTTGAAAAATGAGGGAGTCCCGGTTTATC 1132
Query 1100 GTGCAGTTCAGAATGCAGGGGAGTATGTTCTAACATTCCCTAGAGCATATCATTCGGGAT 1159
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1133 GAGCTGTTCAGAATGCAGGGGAGTATGTTCTAACATTCCCTAGAGCATATCATTCGGGTT 1192
Query 1160 TCAACAGCGGATTCAACTGTGCAGAAGCGGTGAATGTGGCTCCTGTTGATTGGCTAGCTC 1219
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1193 TCAACTGCGGATTCAACTGTGCAGAAGCGGTGAATGTGGCTCCGGTTGATTGGCTGGCTC 1252
Query 1220 ATGGTCAAAATGCTGTGGAAATATATAGCCAAGAGAAC-CGGAAAGCTTCTTTGTCTCAT 1278
|||| || |||||||||||||||||||||||||||| | |||||| | ||| | ||||||
Sbjct 1253 ATGGACAGAATGCTGTGGAAATATATAGCCAAGAGA-CTCGGAAAACGTCTCTATCTCAT 1311
Query 1279 GACAAACTTCTCCTCGGAGCAGCTTATGAAGCTGTTAAGTCCCTCTCAGCTTC-TGGGGA 1337
|||||| ||||||| |||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 1312 GACAAAATTCTCCTTGGAGCAGCTTTTGAAGCTGTTAAGTCCCTCTCAGCA-CATGGGGA 1370
Query 1338 AGATAATACAAAAAGGTTCAGCTGGAAGAGTTTCTGTGGGAAGGATGGTATTCTTA-CTA 1396
|||||||||||||||||||||||||||||| |||||||||||||| ||||| | || |||
Sbjct 1371 AGATAATACAAAAAGGTTCAGCTGGAAGAGATTCTGTGGGAAGGACGGTAT-CATAACTA 1429
Query 1397 AGGCAATCGAGGCGCGGTTACGGATAGAAGAAAGAAGAATTGAGGCCCTTGGAAATGGTT 1456
|||| |||||||| ||||||||||| ||||||| |||||||||||| |||||||||||||
Sbjct 1430 AGGCCATCGAGGCACGGTTACGGATGGAAGAAAAAAGAATTGAGGCTCTTGGAAATGGTT 1489
Query 1457 TCAGCTTGAG-AAAGATGGA-AAAGGACTTTGATTCAAAAGGTGAAATGGAATGCATCTC 1514
|||||||| | ||||||||| |||| ||||||||||||| |||||| ||||||||||||
Sbjct 1490 TCAGCTTG-GTAAAGATGGATAAAG-ACTTTGATTCAAACTGTGAAAGGGAATGCATCTC 1547
Query 1515 TTGCTTTAGTGACTTGCATCTCTCTGCTACTGGCTGCAACAACTGCTCATCTTTCGAAGA 1574
||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||
Sbjct 1548 TTGCTTTAGTGACTTGCATCTCTCTGCTACTGGCTGCAAGAATTGCTCATCTCTCGAAGA 1607
Query 1575 ATATGGTTGCACGAAACACGATATATGTTCATGTGAAGGGAACGACCGGTTCATCTATCT 1634
|||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| | |||
Sbjct 1608 ATATGGTTGCACGAAACACGATATTTGTTCATGTGAAGGGAAAGACCGTTTCATTTTTCT 1667
Query 1635 TCGTTACACCATAGATGAGTTAAGCTCGTTGATAAGAGCATTGGAAGGTGAATCAGATGA 1694
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1668 TCGTTACACCATAGATGAGTTAAGCTCATTGGTAAGAGCATTGGAAGGTGAATCAGATGA 1727
Query 1695 TTTAAAAACTTGGGCTT-CCAAAGTC 1719
| ||||| ||||| ||| ||||||||
Sbjct 1728 TCTAAAAGCTTGG-CTTTCCAAAGTC 1752
Score = 697 bits (377), Expect = 0.0
Identities = 518/583 (89%), Gaps = 22/583 (4%)
Strand=Plus/Plus
Query 1778 ATGGTGAGTGTAAT-ACTGCTTCTGAGATATGTGATGATGCATCCATTATGGAATTTGCT 1836
|||||||||||||| | | |||||||||||||||| ||||||||||| ||||| || |||
Sbjct 1841 ATGGTGAGTGTAATAAAT-CTTCTGAGATATGTGAGGATGCATCCATCATGGACTTAGCT 1899
Query 1837 GCTTAT-GTCGTCGAACCTATAAATCTTGGGTTCTTGGTCGTCGGAAAGCTTTGGTGTAA 1895
|||||| | || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1900 GCTTATCAT-GTTGAACCTATAAATCTTGGGTTCTTGGTCGTGGGAAAGCTTTGGTGTAA 1958
Query 1896 CAAGGATGCTATATTTCCAAGAGGGTTTAAGAGTCGGGTTAAATTTTATAACATGCAAGA 1955
|||| ||||||||||||||| ||||||||||||||| ||||| || |||||| |||||||
Sbjct 1959 CAAGCATGCTATATTTCCAAAAGGGTTTAAGAGTCGTGTTAAGTTCTATAACGTGCAAGA 2018
Query 1956 TCCAATGAGAATGAGCTATTACGTCTCTGAGATTTTAGATGCCGGACTTATGGGTCCACT 2015
|||||||||||| ||||||||||||||||||||| ||||||| |||||| ||||||||||
Sbjct 2019 TCCAATGAGAATAAGCTATTACGTCTCTGAGATTGTAGATGCAGGACTTCTGGGTCCACT 2078
Query 2016 CTTCAGGGTTACTTTGGAAGAATCTCAAGACGAGAGCTTCTCTTATGTGTCACCTCAGAA 2075
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2079 CTTCAAGGTTACTTTGGAAGAATCTCAAGACGAGAGCTTCTCTTATGCCTCACCTCAGAA 2138
Query 2076 ATGCTGGGAAATGGTGTTGCTTAGAGTTAAGGAAGAGATGATAAAACGCAGCAGCCAAGA 2135
|||||||||||||||||||||||||||||||||||||| || | |||||||| |||| |
Sbjct 2139 GTGCTGGGAAATGGTGTTGCTTAGAGTTAAGGAAGAGATCATGAGACGCAGCAACCAAAA 2198
Query 2136 ACAAGATGTCCATATGTTGGAAACCATTGACGGGTTAAAAATGTTCGGTTTTCGCTCTCC 2195
||||||||||||||||||||||| ||| || |||||||||||||| || |||||||||||
Sbjct 2199 ACAAGATGTCCATATGTTGGAAAGCATCGATGGGTTAAAAATGTTTGGCTTTCGCTCTCC 2258
Query 2196 GTTTATAGTTCAGGCCACTGAGGCTCTTGACCCGAACCATCACCTAGTGCAGTATTGGAA 2255
|||||| ||||||||||||||||||||||||||||||||| || |||| ||||||||||
Sbjct 2259 GTTTATTGTTCAGGCCACTGAGGCTCTTGACCCGAACCATGGCCAAGTGGAGTATTGGAA 2318
Query 2256 CCATAAGAATGAGACGGCTT-GCT---------------C--CATGTCAAATTCTTCCCT 2297
|||||||||||||| || || ||| | |||||||||||||||||
Sbjct 2319 CCATAAGAATGAGAAGGATTCGCTGGAAATGAAAGATTGCTTCATGTCAAATTCTTCCCA 2378
Query 2298 GAGCTTAACCAAAACAAAACTTTTTGGGGTTGATTTGAATTGA 2340
|||||||| |||| ||| |||||||||||||||||||||||||
Sbjct 2379 GAGCTTAAGCAAAGCAAGACTTTTTGGGGTTGATTTGAATTGA 2421
Score = 99.0 bits (53), Expect = 2e-19
Identities = 61/65 (94%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCCTTTCAGTGCTGCTCAGAACAAAGAGGACAAGGACACTAATGTAGAATCTCCT 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1 ATGGAGCCTTTCAGTGCTGCTCAGAACAAAGAGGACAAGGACACTAGCGTAGAACCTCCT 60
Query 61 AGTAG 65
||||
Sbjct 61 CGTAG 65
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116164061130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5