BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg901330 Length=2340 Score E Sequences producing significant alignments: (Bits) Value AT2G34880.1 | Symbols: MEE27, PKDM7C | Transcription factor jum... 2012 0.0 > AT2G34880.1 | Symbols: MEE27, PKDM7C | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | chr2:14711880-14716634 REVERSE LENGTH=2421 Length=2421 Score = 2012 bits (1089), Expect = 0.0 Identities = 1510/1706 (89%), Gaps = 57/1706 (3%) Strand=Plus/Plus Query 35 ACAAGGACACTAATGTAGAATCTCCTAGTAGTCCGCGTCATCGGGAGATTCTTGCTAGAT 94 |||||| ||||||||||||| |||||||||||||| ||||| | || |||||||||||| Sbjct 83 ACAAGGGCACTAATGTAGAACCTCCTAGTAGTCCGTATCATCCGAAGGTTCTTGCTAGAT 142 Query 95 GGGATCCGGCTGATGCAAAGAGGCCAGACATTGGTGAAGCTCCAGTATTCCACCCTACAT 154 ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 143 GGGATCCGGCTAATGAAAAGAGGCCAGACATTGGTGAAGCTCCAGTATTCCACCCTACAT 202 Query 155 CAGAGGAGTTTGAAGATACACTTGCTTACATAGAAAAGATACGTCCCTTAGCTGAATCAT 214 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 203 CAGAGGAGTTTGAAGATACGCTTGCTTACATAGAAAAAATACGTCCCTTAGCTGAATCAT 262 Query 215 TTGGTATTTGTCGAATCGTGCCACCATCGAATTGGTCTCCTCCTTGTCGGCTTAAAGAGA 274 ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| | Sbjct 263 TTGGTATTTGTCGAATCGTGCCACCGTCGAATTGGTCTCCTCCTTGCCGGCTTAAAGGGG 322 Query 275 AAAGTATATGGAAGGATACAAAGTTCCCAACCCGTATTCAGATTGTTGACCTGCTACAGA 334 | |||||||||||| ||| ||| |||||||||||| ||||| ||||||||||||| |||| Sbjct 323 ATAGTATATGGAAGAATAAAAATTTCCCAACCCGTGTTCAGTTTGTTGACCTGCTTCAGA 382 Query 335 ACAGA-GAGCCCATgaagaagaagaagaaacctaagggaaggaaacggaaacgtggaaga 393 ||||| || ||| | ||||||||||| |||||| ||||||||||||||||| |||| | Sbjct 383 ACAGAGGA-CCC--G-TGAAGAAGAAGACACCTAAAGGAAGGAAACGGAAACGAGGAA-A 437 Query 394 a-actcaagaacCGTCGCCTCCAAGAAACGATATGGCTCTGTATCTCGTTCTGTTTCCT- 451 | ||||||||||||||||| ||||||||||| |||||||||| ||| || |||| || Sbjct 438 ATACTCAAGAACCGTCGCCCCCAAGAAACGAAATGGCTCTGTTTCTAAATCAGTTT-CTA 496 Query 452 CACCCAAGACGACCGAAGAAGAGACA-TTTGGTTTC-AACTCTGGTTCAG-ATTTCACTC 508 | |||||| ||||||||||||||| | ||||||||| || |||||| ||| |||| |||| Sbjct 497 CCCCCAAGGCGACCGAAGAAGAGA-ATTTTGGTTTCGAA-TCTGGTCCAGAATTT-ACTC 553 Query 509 TTGAGGACTTTGAGAAATACGCTCGATACTTCAAAGACTATTACTTTGGAAGAAAAGACA 568 ||||| | |||||||||||||||| | | |||||||||| ||||||| ||||||||||| Sbjct 554 TTGAGAAGTTTGAGAAATACGCTCAAGATTTCAAAGACTCCTACTTTGAAAGAAAAGACA 613 Query 569 ATGCTGGAGATACAGAATGGACTCCAACTGTTGAGGAGATCGAAGGAGAGTACTGGAGGA 628 ||| | | | | || |||| ||||||||||||||||||||||||||||||| | Sbjct 614 ATG-T-----T---GGA--GA-TCCATCTGTTGAGGAGATCGAAGGAGAGTACTGGAGAA 661 Query 629 TCATTGAGCAACCAACAGATGAAGTCGAGGTATCT-TATGGCG-CTGATTTGGAGAA-CA 685 |||||||| || |||| ||||||| |||||| | ||||| | | ||||||||||| | Sbjct 662 TCATTGAGAAAGAAACAAATGAAGTTAAGGTAT-TGTATGG-GACGGATTTGGAGAATCC 719 Query 686 GAGTACTTGGAAGTGGATTT-TACAAGAGAGGG--GACATGAAAACCGGAAGAAGCGATA 742 | |||||||||| || ||| | ||| || ||| | || |||| |||||| |||| Sbjct 720 CA-TACTTGGAAGCGG-TTTCTCCAA-AG-GGGTAAAAATTCCAACCAGAAGAAATGATA 775 Query 743 TGGATCCATACATAGCTTCAGGTTGGAACTTGAACAACCTAC-CGAGGCTCCCTGGCTCG 801 ||||| ||||||| |||| |||||||| ||||||||||| | | | || | || || Sbjct 776 TGGATAAATACATATCTTCTGGTTGGAATTTGAACAACCT-CGCCCGTCTGCAGGGATC- 833 Query 802 T-TACTGTCATTCGAGGATTCTCATATTTCTGGTGTTCTCGTGCCATGGTTGTACATTGG 860 | |||| || || ||||||| | | || || || |||| ||||||||| | || | || Sbjct 834 TCTACTATCCTTTGAGGATTGTGAGATCTCAGGGGTTCAGGTGCCATGGCTCTATGTGGG 893 Query 861 CATGTGCTTTTCAACGTTTTGTTGGCATGTCGAGGACAATCATCTATACTCACTGAACTA 920 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 894 CATGTGCTTTTCAACGTTTTGTTGGCATGTTGAGGACAATCATCTATATTCACTGAACTA 953 Query 921 TCATCACTTTGGCGAGCCAAAAGTATGGTACGGAGTTCCCGGAAGCCATGCAACTGGGCT 980 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 954 TCATCACTTTGGCGAGCCAAAAGTATGGTACGGAGTTCCGGGAAGCCATGCAACTGGGCT 1013 Query 981 AGAGAAGGCGATGAGAAAACATCTACCAGATTTGTTCGATGAACAACCTGATCTACTTCA 1040 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1014 AGAGAAGGCAATGAGAAAACATCTACCAGATTTGTTCGATGAACAACCTGATCTACTTCA 1073 Query 1041 TGAACTAGTTACTCAGTTTTCTCCAA-GCATTTTGAAAGATGAGGGAGTCCCGGTTTATC 1099 |||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||||||| Sbjct 1074 TGAACTGGTTACTCAGTTTTCTCCAACG-ATTTTGAAAAATGAGGGAGTCCCGGTTTATC 1132 Query 1100 GTGCAGTTCAGAATGCAGGGGAGTATGTTCTAACATTCCCTAGAGCATATCATTCGGGAT 1159 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1133 GAGCTGTTCAGAATGCAGGGGAGTATGTTCTAACATTCCCTAGAGCATATCATTCGGGTT 1192 Query 1160 TCAACAGCGGATTCAACTGTGCAGAAGCGGTGAATGTGGCTCCTGTTGATTGGCTAGCTC 1219 ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 1193 TCAACTGCGGATTCAACTGTGCAGAAGCGGTGAATGTGGCTCCGGTTGATTGGCTGGCTC 1252 Query 1220 ATGGTCAAAATGCTGTGGAAATATATAGCCAAGAGAAC-CGGAAAGCTTCTTTGTCTCAT 1278 |||| || |||||||||||||||||||||||||||| | |||||| | ||| | |||||| Sbjct 1253 ATGGACAGAATGCTGTGGAAATATATAGCCAAGAGA-CTCGGAAAACGTCTCTATCTCAT 1311 Query 1279 GACAAACTTCTCCTCGGAGCAGCTTATGAAGCTGTTAAGTCCCTCTCAGCTTC-TGGGGA 1337 |||||| ||||||| |||||||||| |||||||||||||||||||||||| | |||||| Sbjct 1312 GACAAAATTCTCCTTGGAGCAGCTTTTGAAGCTGTTAAGTCCCTCTCAGCA-CATGGGGA 1370 Query 1338 AGATAATACAAAAAGGTTCAGCTGGAAGAGTTTCTGTGGGAAGGATGGTATTCTTA-CTA 1396 |||||||||||||||||||||||||||||| |||||||||||||| ||||| | || ||| Sbjct 1371 AGATAATACAAAAAGGTTCAGCTGGAAGAGATTCTGTGGGAAGGACGGTAT-CATAACTA 1429 Query 1397 AGGCAATCGAGGCGCGGTTACGGATAGAAGAAAGAAGAATTGAGGCCCTTGGAAATGGTT 1456 |||| |||||||| ||||||||||| ||||||| |||||||||||| ||||||||||||| Sbjct 1430 AGGCCATCGAGGCACGGTTACGGATGGAAGAAAAAAGAATTGAGGCTCTTGGAAATGGTT 1489 Query 1457 TCAGCTTGAG-AAAGATGGA-AAAGGACTTTGATTCAAAAGGTGAAATGGAATGCATCTC 1514 |||||||| | ||||||||| |||| ||||||||||||| |||||| |||||||||||| Sbjct 1490 TCAGCTTG-GTAAAGATGGATAAAG-ACTTTGATTCAAACTGTGAAAGGGAATGCATCTC 1547 Query 1515 TTGCTTTAGTGACTTGCATCTCTCTGCTACTGGCTGCAACAACTGCTCATCTTTCGAAGA 1574 ||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| Sbjct 1548 TTGCTTTAGTGACTTGCATCTCTCTGCTACTGGCTGCAAGAATTGCTCATCTCTCGAAGA 1607 Query 1575 ATATGGTTGCACGAAACACGATATATGTTCATGTGAAGGGAACGACCGGTTCATCTATCT 1634 |||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| | ||| Sbjct 1608 ATATGGTTGCACGAAACACGATATTTGTTCATGTGAAGGGAAAGACCGTTTCATTTTTCT 1667 Query 1635 TCGTTACACCATAGATGAGTTAAGCTCGTTGATAAGAGCATTGGAAGGTGAATCAGATGA 1694 ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 1668 TCGTTACACCATAGATGAGTTAAGCTCATTGGTAAGAGCATTGGAAGGTGAATCAGATGA 1727 Query 1695 TTTAAAAACTTGGGCTT-CCAAAGTC 1719 | ||||| ||||| ||| |||||||| Sbjct 1728 TCTAAAAGCTTGG-CTTTCCAAAGTC 1752 Score = 697 bits (377), Expect = 0.0 Identities = 518/583 (89%), Gaps = 22/583 (4%) Strand=Plus/Plus Query 1778 ATGGTGAGTGTAAT-ACTGCTTCTGAGATATGTGATGATGCATCCATTATGGAATTTGCT 1836 |||||||||||||| | | |||||||||||||||| ||||||||||| ||||| || ||| Sbjct 1841 ATGGTGAGTGTAATAAAT-CTTCTGAGATATGTGAGGATGCATCCATCATGGACTTAGCT 1899 Query 1837 GCTTAT-GTCGTCGAACCTATAAATCTTGGGTTCTTGGTCGTCGGAAAGCTTTGGTGTAA 1895 |||||| | || ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1900 GCTTATCAT-GTTGAACCTATAAATCTTGGGTTCTTGGTCGTGGGAAAGCTTTGGTGTAA 1958 Query 1896 CAAGGATGCTATATTTCCAAGAGGGTTTAAGAGTCGGGTTAAATTTTATAACATGCAAGA 1955 |||| ||||||||||||||| ||||||||||||||| ||||| || |||||| ||||||| Sbjct 1959 CAAGCATGCTATATTTCCAAAAGGGTTTAAGAGTCGTGTTAAGTTCTATAACGTGCAAGA 2018 Query 1956 TCCAATGAGAATGAGCTATTACGTCTCTGAGATTTTAGATGCCGGACTTATGGGTCCACT 2015 |||||||||||| ||||||||||||||||||||| ||||||| |||||| |||||||||| Sbjct 2019 TCCAATGAGAATAAGCTATTACGTCTCTGAGATTGTAGATGCAGGACTTCTGGGTCCACT 2078 Query 2016 CTTCAGGGTTACTTTGGAAGAATCTCAAGACGAGAGCTTCTCTTATGTGTCACCTCAGAA 2075 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2079 CTTCAAGGTTACTTTGGAAGAATCTCAAGACGAGAGCTTCTCTTATGCCTCACCTCAGAA 2138 Query 2076 ATGCTGGGAAATGGTGTTGCTTAGAGTTAAGGAAGAGATGATAAAACGCAGCAGCCAAGA 2135 |||||||||||||||||||||||||||||||||||||| || | |||||||| |||| | Sbjct 2139 GTGCTGGGAAATGGTGTTGCTTAGAGTTAAGGAAGAGATCATGAGACGCAGCAACCAAAA 2198 Query 2136 ACAAGATGTCCATATGTTGGAAACCATTGACGGGTTAAAAATGTTCGGTTTTCGCTCTCC 2195 ||||||||||||||||||||||| ||| || |||||||||||||| || ||||||||||| Sbjct 2199 ACAAGATGTCCATATGTTGGAAAGCATCGATGGGTTAAAAATGTTTGGCTTTCGCTCTCC 2258 Query 2196 GTTTATAGTTCAGGCCACTGAGGCTCTTGACCCGAACCATCACCTAGTGCAGTATTGGAA 2255 |||||| ||||||||||||||||||||||||||||||||| || |||| |||||||||| Sbjct 2259 GTTTATTGTTCAGGCCACTGAGGCTCTTGACCCGAACCATGGCCAAGTGGAGTATTGGAA 2318 Query 2256 CCATAAGAATGAGACGGCTT-GCT---------------C--CATGTCAAATTCTTCCCT 2297 |||||||||||||| || || ||| | ||||||||||||||||| Sbjct 2319 CCATAAGAATGAGAAGGATTCGCTGGAAATGAAAGATTGCTTCATGTCAAATTCTTCCCA 2378 Query 2298 GAGCTTAACCAAAACAAAACTTTTTGGGGTTGATTTGAATTGA 2340 |||||||| |||| ||| ||||||||||||||||||||||||| Sbjct 2379 GAGCTTAAGCAAAGCAAGACTTTTTGGGGTTGATTTGAATTGA 2421 Score = 99.0 bits (53), Expect = 2e-19 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 1 ATGGAGCCTTTCAGTGCTGCTCAGAACAAAGAGGACAAGGACACTAATGTAGAATCTCCT 60 |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 1 ATGGAGCCTTTCAGTGCTGCTCAGAACAAAGAGGACAAGGACACTAGCGTAGAACCTCCT 60 Query 61 AGTAG 65 |||| Sbjct 61 CGTAG 65 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 116164061130 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5