BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901342
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35000.1 | Symbols: | RING/U-box superfamily protein | chr2... 1637 0.0
> AT2G35000.1 | Symbols: | RING/U-box superfamily protein | chr2:14751574-14753319
REVERSE LENGTH=1746
Length=1746
Score = 1637 bits (886), Expect = 0.0
Identities = 1061/1144 (93%), Gaps = 17/1144 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATCATCGACACAAACTCCAGCCGTTGGATCCCTCACAACCTTCTCTTCCTTCTC 60
||||||||| |||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 375 ATGGCGATCCTCGACACAAAGTCCAGCCGTTGGATCCCACACAACCTTCTCTTTCTTCTC 434
Query 61 CTCTTGCTATTGCTCCAGTCAGTACCGTATGGA-TC---C-G-GTCAGACCACACCGCCC 114
|||||||| |||||||||||||||||||||||| || | | |||||||||||| |||
Sbjct 435 CTCTTGCTCTTGCTCCAGTCAGTACCGTATGGATTCGGTCAGACTCAGACCACACCACCC 494
Query 115 GGAACTACACAAACGAAAGCC-AACGATCCAATTGTTGTAGTGATAACGGTTATGTTTGT 173
||||| ||| |||||||| || ||||||||| ||||||| || || |||||| ||||| |
Sbjct 495 GGAACAACAAAAACGAAA-CCTAACGATCCAGTTGTTGTTGTAATCACGGTTTTGTTTTT 553
Query 174 GGTGATCTTCTTCATGGTCTTCGGTTCCATCTTCTGTCGTCGAAGCAACGCGCGGTTTTA 233
|||||||| ||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 554 AGTGATCTTTTTCATGGTCTTCGGTTCCATCTTCTGTCGTCGAAGCAACGCACAG-TTT- 611
Query 234 CTCACGTTCTTCTGTTTTCCGATCCACCGACGCAGACGCGGAGTC-CCGCGTGGTGAGGA 292
||||||||||| ||||||||||||||||||||||||| ||||| | | || || ||||
Sbjct 612 -TCACGTTCTTCCATTTTCCGATCCACCGACGCAGACGCCGAGTCTCAG-GTCGTCAGGA 669
Query 293 TCAGAAGGTCGACGGCGCGTGGGCTCGAGGCGGAGGCTATAGAATCTTTCCCGACGTTTC 352
|||| |||| |||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 670 TCAGGAGGTTGACGGCGCGTGGGCTCGACGCGGAGGCTATAGAAACTTTCCCGACGTTTC 729
Query 353 TTTACTCGGAGGTGAAGGCGGTGAGGATCGGTAAAGGTGGTGTGGAGTGTGCGGTTTGTC 412
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 730 TTTACTCGGAGGTGAAGGCGGTGAGGATCGGGAAAGGTGGTGTGGAGTGTGCGGTTTGTC 789
Query 413 TCTGTGAATTCGAAGACGACGAAACGCTGCGTTTGATGCCTCCTTGTTGCCACGTGTTTC 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 TCTGTGAATTCGAAGACGACGAAACGCTGCGTTTGATGCCTCCTTGTTGCCACGTGTTTC 849
Query 473 ACGTCGATTGCGTTGACGTCTGGCTCTCAGAACACTCCACGTGTCCTCTCTGTAGAGCGG 532
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 ACGCCGATTGTGTTGACGTCTGGCTCTCAGAACACTCCACGTGTCCTCTCTGTAGAGCGG 909
Query 533 ATCTTGTCCTCAGCCAACATGGTGACGACGACGACAGTACTGAAAGCTACTCGGGTACAG 592
|||||||||| | |||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 910 ATCTTGTCCTAAACCAACAAGGTGACGACGACGACAGCACTGAAAGCTACTCGGGTACGG 969
Query 593 ATCCGGGTACGATTTCGTCGGGTACGGATCCTGAGAGAGGAATGGTTTTGGAATCTTCGG 652
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 970 ATCCAGGTACGATTTCGTCGAGTACGGATCCTGAGAGAGGAATGGTTTTGGAATCTTCGG 1029
Query 653 ACGCGCATTTGCTGGATGGAGTGACGTGGACCAATAGTAACATAACGCCTCGGTCAAAGT 712
|||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||
Sbjct 1030 ACGCGCATTTGCTGGATGCTGTGACGTGGAGCAATAGTAACATAACACCTCGGTCAAAGT 1089
Query 713 CAACGGGATTATCCAGCTGGCGTATAACCGGAATTTTGTTCCCGAGATCTCATTCGACCG 772
||||||| ||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 1090 CAACGGGGTTATCCAGCTGGCAAATAACCGGAATTTTGTTCCCGAGATCGCACTCGACCG 1149
Query 773 GACATTCGTTGGTTCAACCGGCTGGAAATCTAGACCGGTTTACGTTGACCTTACCTGATG 832
|||||||||| ||||||||||||| |||||||||||||||||||||| ||||| ||||
Sbjct 1150 GACATTCGTTAATTCAACCGGCTGGGAATCTAGACCGGTTTACGTTGAGGTTACCGGATG 1209
Query 833 ATGTACGACGGCAA-TTGATGAAGACATCGAGGACGATGGGACACGTGGCGTTATTACCT 891
|||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1210 ATGTACGACGGCAACTT-ATGAAGACATCGAGGACGATGGGACACGTGGCGTTACTACCT 1268
Query 892 CAGGCGAGGAGTTCACGGAGCGGTTACAGAAGCGGTAGCGTCGGGAGCGAGAGAAGCGTT 951
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1269 CAGGCGAGGAGTTCACGGAGCGGTTATAGAAGCGGTAGCGTCGGGAGCGAGAGAAGCGCT 1328
Query 952 TTTACGTACGGACGGAAGAGTAATAATAACAATCGACGGCTGCATTCGCTGTCTTTTTCA 1011
|| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1329 TTCCCGTACGGACGTAAGAGTAATAATAACAATCGACGGCTTCATTCGCTGTCTTTTTCA 1388
Query 1012 TTCTCTTTCCGGAGTGGTTCTGTGCGGTCTACTTTCTCCGGAGATGCGCCAAAGAATCTT 1071
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 1389 TTCTCTTTCCGGAGTGGTTCCGTACGGTCTACTTTCTCCGGAGATGCGCCGAAGAATCTT 1448
Query 1072 CCGACATCTG-TCGAAGCTGGTGAACGGTCTTTCGAACGGCTCCGACCAGATGATCGAGT 1130
|||||||| | | ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1449 CCGACATC-GATTGAAGCTGGTGAACGGTCTTTCGAACGGCTCCGACCAGATGAACGAGT 1507
Query 1131 GTAA 1134
||||
Sbjct 1508 GTAA 1511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55622203860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5