BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg901363

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G56130.1 | Symbols: TEX1, AtTEX1, THO3 | Transducin/WD40 rep...   165    1e-40
  AT4G12990.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   110    7e-24


> AT5G56130.1 | Symbols: TEX1, AtTEX1, THO3 | Transducin/WD40 repeat-like 
superfamily protein | chr5:22722482-22725095 REVERSE 
LENGTH=1251
Length=1251

 Score =  165 bits (89),  Expect = 1e-40
 Identities = 97/101 (96%), Gaps = 0/101 (0%)
 Strand=Plus/Plus

Query  23   GTGGAAAATGCACACAGCAGGCAGAACTTAGTGGAGAGAATATAAATATCACCTACAAAC  82
            ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct  323  GTGGAAAATGCACACAGCAGGTAGAACTTAGTGGAGAGAATATAAACATCACCTACAAAC  382

Query  83   CTGACGGGACACATGTAGCTGTTGGTAATAGGGTTAATGAG  123
            ||||||||||||||||||||||||||||||||| | |||||
Sbjct  383  CTGACGGGACACATGTAGCTGTTGGTAATAGGGATGATGAG  423


> AT4G12990.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: plant-type cell wall; EXPRESSED IN: 23 plant 
structures; EXPRESSED DURING: 13 growth stages; Has 4 Blast 
hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; 
Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr4:7594944-7595463 REVERSE 
LENGTH=520
Length=520

 Score =  110 bits (59),  Expect = 7e-24
 Identities = 65/68 (96%), Gaps = 0/68 (0%)
 Strand=Plus/Plus

Query  149  TTTTCTTCTTGAATACTGGAGTTGGTGAGGATTTGAAATTATGTACTTTCCTACACACGA  208
            |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||
Sbjct  353  TTTTCTTCTTGAATACTGGACTTGGTGAGGATTTGAAATTATGTACTTTCCTGCACATGA  412

Query  209  TTCCCTAG  216
            ||||||||
Sbjct  413  TTCCCTAG  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9651407808


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5