BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901368
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35250.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1230 0.0
> AT2G35250.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:14846662-14848662 REVERSE LENGTH=1029
Length=1029
Score = 1230 bits (666), Expect = 0.0
Identities = 919/1040 (88%), Gaps = 22/1040 (2%)
Strand=Plus/Plus
Query 1 ATGGCATTACATCTAGCGTTAGGTCTATGTGTATATCTGCTGTTTACACAAGGTGCACAG 60
|||||||||| |||||| ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCATTACGTCTAGCTTTAAGTCTATGTGTTTATCTGCTGTTTACACAAGGTGCACAG 60
Query 61 GGAAACATTGATGATTTTGATTGTGTTGAGATATACAAACAACCGGCTTTCAAACATCCA 120
||||||| |||||||||||||||||| || |||||||||||||| |||||| ||||||||
Sbjct 61 GGAAACACTGATGATTTTGATTGTGTGGAAATATACAAACAACCAGCTTTCCAACATCCA 120
Query 121 TTGTTAAAAAATCACAAGATTCAGGAAACATTCAGCCTAGATGGAAATATTGAAAGAAGC 180
||||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 121 TTGTTGAAAGATCACAAGATCCAGGAAACATTCAGCCTAGATGGAAAAATTGAAAGAAGC 180
Query 181 AACAAATATAAAACCAAAGAGCATTGTCCAAAAGGAACAGTTCCAATTTTAAGACAAGGA 240
||||||||||| || ||||||||||||||||||||||| ||| ||||||| |||||| ||
Sbjct 181 AACAAATATAATACAAAAGAGCATTGTCCAAAAGGAACCGTTGCAATTTTGAGACAAAGA 240
Query 241 AATGAATCTCAA-AGCGTTCATCTGAATACAGCCGAGTATTCTGGTCAACATTTTGCAAC 299
|||| ||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 241 AATGTATC-CAAGGGCGTTCATTTGAATACCGCCGAGTATTCTGGTCAACATTTTGCAAC 299
Query 300 AATTGAGACTACGTTAGATGGAAGTATCTATCGGGGAACTGAAGCTGAAATAAGTGTTCA 359
||||||||| | |||||||||||||| ||||||||| | |||||||| |||||| ||||
Sbjct 300 AATTGAGACCATTTTAGATGGAAGTATATATCGGGGAGCAGAAGCTGATATAAGTATTCA 359
Query 360 TGATCTT-AAATTGCAAAATAATCAATACAGTAAAAGTCAAATATGGTTAGAGAATGGAC 418
|||| || ||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 360 TGAT-TTGAAACTGCAAAATAACCAATACAGTAAAAGTCAAATATGGTTAGAGAATGGAC 418
Query 419 CTCGAGCTCAACTCAATAGTATACAAGCTGGTTGGGCAGTACATCCAAGATTATACGGTG 478
||| || |||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 419 CTCCAGGTCAACTCAATAGTATACAAGCTGGTTTGGCAGTACATCCAAGATTGTACGGTG 478
Query 479 ATAGTGTCACGA-GATTTACAATCTATTGGACTGGAGATGGTTACCAAAAAACAGGGTGC 537
|||||||||| | |||||||||| |||||||||||||||||||| || ||||| ||||||
Sbjct 479 ATAGTGTCAC-ACGATTTACAATATATTGGACTGGAGATGGTTATCAGAAAACTGGGTGC 537
Query 538 TATAATATGCAATGCCCTGGCTTTGTGGTTGTAAGTCGAAATCCTACACTTGGAAAG-GG 596
||||||| ||||||||||||||||||||||||||||||||| | | | |||||| | ||
Sbjct 538 TATAATACACAATGCCCTGGCTTTGTGGTTGTAAGTCGAAATTCAAGAATTGGAA-GCGG 596
Query 597 ATTTGGGGGATCATCTGCCTATGGTCAAACAAGTCTTACGTTTAAATTGCAAATTTTCCA 656
|||| ||||| |||||| ||||||| |||||||||||||||||||||||||| |||| ||
Sbjct 597 ATTTTGGGGAACATCTGTCTATGGTAAAACAAGTCTTACGTTTAAATTGCAAGTTTTTCA 656
Query 657 GGATGGATTCAGCGGAAATTGGGGACTGAAAATGTCTAACGAAATAATTGGTTATTGGCC 716
|||||| |||||||||||||||| ||| ||||||| | | ||| | ||||||||||||||
Sbjct 657 GGATGGCTTCAGCGGAAATTGGGCACTTAAAATGTTTGATGAAGTCATTGGTTATTGGCC 716
Query 717 AAAAGAGTTATTT-CAGCACTT-AAGTAATGGAGCTTCTCTAATAAGATATGGAGGGAAC 774
|||||||||||| || || || || |||||||||||||||| ||||||||||||| ||
Sbjct 717 TAAAGAGTTATTTTCA-CATTTGAA-TAATGGAGCTTCTCTAGTAAGATATGGAGGAAAT 774
Query 775 ACTTATTTA-TCTCCCGACGGATTTAGTCCTCCAATGGGTAATGGACATTTTCCCGTTCC 833
|||| || | |||||||| ||| | |||||||||||||| ||||| |||||| ||| |
Sbjct 775 ACTT-TTGAATCTCCCGATGGAATCAGTCCTCCAATGGGCAATGGGTTTTTTCCAGTTGC 833
Query 834 AGACTTCAAAAAGACGGCACATTTTAAAAACATAGG-GATTATAAACTCGGACTATAAA- 891
||||| |||||||||||||||||||| ||| | | | ||||||||||||||||||||
Sbjct 834 GGACTTTAAAAAGACGGCACATTTTAATAACGTCGTTG-TTATAAACTCGGACTATAAAA 892
Query 892 GCAGATTATATTGATGATAGGAAAGTAAGACTTTATG-CGGATTCCAATAGTTGCTTTAG 950
| || ||| ||||| | ||||||| || ||||||||| || ||||| ||| ||| |||||
Sbjct 893 G-AGTTTACATTGAAGGTAGGAAAATACGACTTTATGTCG-ATTCCTATAATTGTTTTAG 950
Query 951 GGTGTCATATTGGGGTTATACCAAAT-TCACCGGAAAAGCTTTTTCGTTTGGAGGACCAG 1009
|| | ||||||||||||||||||||| | || ||| |||| ||||| |||||||||||||
Sbjct 951 GGCGACATATTGGGGTTATACCAAATCT-ACAGGAGAAGCCTTTTCATTTGGAGGACCAG 1009
Query 1010 GTGGAAAATGTGGTATTTGA 1029
||||||| |||||| |||||
Sbjct 1010 GTGGAAATTGTGGTTTTTGA 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5