BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901398
Length=351
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35520.2 | Symbols: DAD2 | Defender against death (DAD famil... 556 4e-158
AT1G32210.1 | Symbols: ATDAD1 | Defender against death (DAD fam... 370 5e-102
> AT2G35520.2 | Symbols: DAD2 | Defender against death (DAD family)
protein | chr2:14921493-14922841 FORWARD LENGTH=629
Length=629
Score = 556 bits (301), Expect = 4e-158
Identities = 330/343 (96%), Gaps = 5/343 (1%)
Strand=Plus/Plus
Query 13 TCGACTAGTAAGGATGCTCAGGATCTCTTCCATTCTCTTCGTTCTGCTTAT-CTCGCTAC 71
|||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||
Sbjct 104 TCGACTAGTAAGGATGCTCAGGATCTCTTCCATTCTCTTCACTCTGCTTATAC-CGCTAC 162
Query 72 ACCGACGAATCTCAAGATCATCGACCTTTATGTTTGTTTCGCGGTCTTCACAGCTTTGA- 130
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 ACCAACGAATCTCAAGATCATCGACCTTTATGTTTGTTTCGCGGTCTTCACAGCTTTGAT 222
Query 131 TC--CAGGTTGCTTACATGGCTCTTGTTGGATCGTTTCCTTTCAACTCGTTTCTCTCAGG 188
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 223 TCAGCAGGTTGCTTACATGGCTCTTGTTGGATCGTTTCCTTTCAACTCATTTCTCTCTGG 282
Query 189 AGTTCTCTCGTGTATTGGGACAGCCGTTCTTGCTGTCTGCCTCCGGATTCAAGTGAACAA 248
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 283 AGTTCTCTCGTGTATCGGGACAGCGGTTCTTGCTGTCTGCCTCCGGATTCAAGTGAACAA 342
Query 249 AGAAAACAAGGAATTTAAGGATTTAGCACCGGAGCGAGCTTTTGCTGATTTTGTCCTCTG 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 AGAAAACAAGGAATTTAAGGATTTAGCACCGGAGCGAGCTTTTGCTGATTTTGTCCTCTG 402
Query 309 CAACTTAGTCCTCCACCTAGTGATCATAAACTTCTTAGGATAA 351
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct 403 CAACTTAGTCCTCCACCTAGTGATCATAAACTTCTTGGGATAA 445
> AT1G32210.1 | Symbols: ATDAD1 | Defender against death (DAD family)
protein | chr1:11605857-11607768 REVERSE LENGTH=654
Length=654
Score = 370 bits (200), Expect = 5e-102
Identities = 298/344 (87%), Gaps = 12/344 (3%)
Strand=Plus/Plus
Query 13 TCGACTAGTAAGGATGCTCAGGATCT-CTTCCATTCTCTTCGTTCTGCTTA-TCTCGCTA 70
||||| |||||||||||||||||||| ||| | |||||||| |||||||| ||| ||||
Sbjct 126 TCGACGAGTAAGGATGCTCAGGATCTATTTCGA-TCTCTTCGGTCTGCTTATTCT-GCTA 183
Query 71 CACCGACGAATCTCAAGATCATCGACCTT-TATGTTTG-TTTCGCGGTCTTCACAGCTTT 128
| ||||| ||||| ||||||||||| ||| |||| | | |||||| |||||||| ||| |
Sbjct 184 CTCCGACTAATCTTAAGATCATCGA-CTTGTATG-TCGTTTTCGCTGTCTTCACCGCTCT 241
Query 129 GATCCAGGTTGCTTACATGGCTCTT-GTTGGATCGTTTCC-TTTCAACTCGTTTCTCTCA 186
||| ||||| | ||| |||||| || || ||||| ||||| ||| |||||||| || ||
Sbjct 242 GATTCAGGTGGTTTATATGGCT-TTGGTGGGATCATTTCCATTT-AACTCGTTCCTATCT 299
Query 187 GGAGTTCTCTCGTGTATTGGGACAGCCGTTCTTGCTGTCTGCCTCCGGATTCAAGTGAAC 246
||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 300 GGAGTTCTCTCTTGTATCGGGACAGCAGTTCTTGCTGTTTGCCTCCGGATTCAAGTGAAC 359
Query 247 AAAGAAAACAAGGAATTTAAGGATTTAGCACCGGAGCGAGCTTTTGCTGATTTTGTCCTC 306
||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| |||
Sbjct 360 AAAGAAAACAAGGAATTCAAGGATTTAGCACCTGAGAGAGCTTTTGCTGATTTTGTTCTC 419
Query 307 TGCAACTTAGTCCTCCACCTAGTGATCATAAACTTCTTAGGATA 350
||||||||||||||||| | |||||||| |||||| | |||||
Sbjct 420 TGCAACTTAGTCCTCCATTTGGTGATCATCAACTTCCTCGGATA 463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16437553923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5