BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901452
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36026.1 | Symbols: | Ovate family protein | chr2:15127265-... 859 0.0
AT2G36030.1 | Symbols: | unknown protein; Has 1 Blast hits to ... 318 3e-86
> AT2G36026.1 | Symbols: | Ovate family protein | chr2:15127265-15127816
FORWARD LENGTH=552
Length=552
Score = 859 bits (465), Expect = 0.0
Identities = 523/551 (95%), Gaps = 4/551 (1%)
Strand=Plus/Plus
Query 1 ATGACGACAGGCAAAAGCAAGAAGAAGAAGATGGTCCTTAAGGCAGTCTCTGTCGTAGAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACGACAGGCAAAAGCAAGAAGAAGAAGATGGTCCTTAAGGCAGTCTCTGTCGTAGAC 60
Query 61 ATCGGCTGTGGCAACTGTAAGTTCCCAAGCTTGTCTTCTTTTTTCAACCCTACCCCAAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 61 ATCGGCTGTGGCAACTGTAAGTTCCCAAGCTTGTCTTCTTTTTTCAACCCTTCCCCCAAA 120
Query 121 AAGCCCCGCCTCTACTCCTCTAATTACGgccactgccactcctccacccccaccacggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGCCCCGCCTCTACTCCTCTAATTACGGCCACTGCCACTCCTCCACCCCCACCACGGCC 180
Query 181 tcctcctcctccgccgttccctccacctcccactggttctccgacacctcttcctcttcc 240
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 181 TCCTCTTCCTCCGCCGTTCCCTCCACCTCCCACTGGTTCTCTGACACCTCTTCCTCCTCG 240
Query 241 gCAACACCTTCCACCGCCGCTGTCGCCGTCGAGAAAGATTCCGACGACCCTTACCTTGAT 300
|||||||| ||| ||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct 241 GCAACACCCTCCGCCGCCGCTGTCGCCGTCGAGAAAGACTCAGACGATCCTTACCTAGAT 300
Query 301 TTCCGACAGTCTATGCTTCAGATGATTCTCGAGAACGAGATTTACTCCAAAAACGATCTT 360
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCCGACAGTCCATGCTTCAGATGATTCTCGAGAACGAGATTTACTCCAAAAACGATCTC 360
Query 361 AGAGAGCTTCTCCACTGTTTCCTATCCCTTAACGAGCCCTACCACCACGGCATCATCATC 420
||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 361 AGAGAGCTTCTCCACTGCTTCCTCTCCCTTAACGAGCCATACCACCACGGCATCATCATC 420
Query 421 CGCGCTTTCTCCGAAATCTGGGACGGAGTTTTCTCCGCCGCCGTCAAACACCGTGGCGAC 480
|||||||||||||||||||||||||||||||||||||| ||| |||| |||||| |||
Sbjct 421 CGCGCTTTCTCCGAAATCTGGGACGGAGTTTTCTCCGCTGCC---AAACGCCGTGGAGAC 477
Query 481 GTCCAAGAGTCCCCACTCGTCCACCG-CATGGCTCACGTGCCTCGCACCGTAACCACTAC 539
||||||||||| |||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 478 GTCCAAGAGTCTCCACTCGTCCACCGTCATGGCTCACGTGCGTCACACCGTAACCACTAC 537
Query 540 CACCGATCGAA 550
||||| |||||
Sbjct 538 CACCGCTCGAA 548
> AT2G36030.1 | Symbols: | unknown protein; Has 1 Blast hits to
1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:15127559-15127771 REVERSE LENGTH=213
Length=213
Score = 318 bits (172), Expect = 3e-86
Identities = 200/213 (94%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 298 GATTTCCGACAGTCTATGCTTCAGATGATTCTCGAGAACGAGATTTACTCCAAAAACGAT 357
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 GATTTCCGACAGTCCATGCTTCAGATGATTCTCGAGAACGAGATTTACTCCAAAAACGAT 151
Query 358 CTTAGAGAGCTTCTCCACTGTTTCCTATCCCTTAACGAGCCCTACCACCACGGCATCATC 417
|| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 150 CTCAGAGAGCTTCTCCACTGCTTCCTCTCCCTTAACGAGCCATACCACCACGGCATCATC 91
Query 418 ATCCGCGCTTTCTCCGAAATCTGGGACGGAGTTTTCTCCGCCGCCGTCAAACACCGTGGC 477
||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 90 ATCCGCGCTTTCTCCGAAATCTGGGACGGAGTTTTCTCCGCTGCC---AAACGCCGTGGA 34
Query 478 GACGTCCAAGAGTCCCCACTCGTCCACCG-CAT 509
|||||||||||||| |||||||||||||| |||
Sbjct 33 GACGTCCAAGAGTCTCCACTCGTCCACCGTCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829717438
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5