BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg901459 Length=462 Score E Sequences producing significant alignments: (Bits) Value AT2G36110.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 555 2e-157 AT2G32500.1 | Symbols: | Stress responsive alpha-beta barrel d... 466 8e-131 AT2G32490.1 | Symbols: | pseudogene of 3'-5' exonuclease domai... 449 8e-126 > AT2G36110.1 | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr2:15161702-15162676 FORWARD LENGTH=975 Length=975 Score = 555 bits (300), Expect = 2e-157 Identities = 393/438 (90%), Gaps = 6/438 (1%) Strand=Plus/Plus Query 1 ACACCCGGTGGTTCCGATCCTCCACCGGATATTCTCCAACTATGTGTTGGTATCCGCTGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 368 ACACCCGGTGGTTCCGATCCTCCACCGGATATTCTCCAACTATGTGTTGGTAACCGCTGT 427 Query 61 CTCATCATCCAGTTGTTTCACTGTAAGCGCATGCCCGACGTCCTTCGAAGTTTCTTGGAG 120 |||||||||||||||| ||||||||| ||||| || || |||||||||||||||||||| Sbjct 428 CTCATCATCCAGTTGTCTCACTGTAAACGCATTCCTGAGGTCCTTCGAAGTTTCTTGGAA 487 Query 121 GATGAGACAATCACTTTCGTTGGAGTCTGGAACAGTCAAGACAAGGATAATCTCGAGAGA 180 ||||||||||||||||| || || ||||||||||| |||||| ||| || ||||| ||| Sbjct 488 GATGAGACAATCACTTTTGTCGGCGTCTGGAACAGCCAAGACCAGGGCAAGCTCGAAAGA 547 Query 181 TTCCGCCATCAGTTGGAGATATGGAGACTTCTCGACATAAGGCACTATCTGGCTACGTGG 240 |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || Sbjct 548 TTCCGCCATCAGTTGGAGATATGGAGACTTCTAGACATAAGGCACTATCTGCCTACGAGG 607 Query 241 CTCCGCAATAGTTCGTTTGAGCAGGGCCGGTCCGA--A-TGTTTGGGGCACGAGGGAGTG 297 |||| |||||||||||||||| || | | || | ||||||||| || |||||||| Sbjct 608 CTCCTCAATAGTTCGTTTGAGAAGATT-G-TA-GAGGAGTGTTTGGGGTACAAGGGAGTG 664 Query 298 AGGAAAGATAAGGAGATATGTAGGAGTAATTGGGGAGCTCGCAGCCTTTCTCATGATCAA 357 |||||||||||||||||||||| |||||||||||| ||||| |||||||| |||||||| Sbjct 665 AGGAAAGATAAGGAGATATGTATGAGTAATTGGGGTGCTCGTAGCCTTTCCCATGATCAG 724 Query 358 ATTGTTCAGGCGTCACATGATGTCTATGTTTTCTGCAAGCTTGGTGTTAAGGAACGTCTC 417 ||||||||||||||| ||||||||||||||| ||||||||| |||||||||||| || || Sbjct 725 ATTGTTCAGGCGTCAGATGATGTCTATGTTTGCTGCAAGCTCGGTGTTAAGGAATGTATC 784 Query 418 TGGAAAGAGAGCTCTAAT 435 ||||||||| |||| ||| Sbjct 785 TGGAAAGAGCGCTCGAAT 802 > AT2G32500.1 | Symbols: | Stress responsive alpha-beta barrel domain protein | chr2:13794426-13797227 REVERSE LENGTH=1883 Length=1883 Score = 466 bits (252), Expect = 8e-131 Identities = 394/460 (86%), Gaps = 19/460 (4%) Strand=Plus/Minus Query 1 ACACCCGGTGGTTCCGATCCTCCACCGGATATTCTCCAACTATGTGTTGGTA-TCCGCTG 59 |||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1530 ACACCCCGTGGTTCCGATCCTCCACCGGATATTCTCCAACTATGTGTTGGTACTC-GCTG 1472 Query 60 TCTCATCATCCAGTTGTTTCACTGTAAGCGCATGCCCGACGTCCTTCGAAGTTTCTTGGA 119 ||||||||| ||||||| |||||||||| | | |||||||||||| ||||||||||||| Sbjct 1471 TCTCATCATTCAGTTGTCTCACTGTAAGTACGTCCCCGACGTCCTTAGAAGTTTCTTGGA 1412 Query 120 GGATGAGACAATCACTTTCGTTGGAGTCTGGAACAGTCAAGACAAGGATAATCTCGAGAG 179 ||| ||||||||||||| || || || |||||||| ||||||||||| || |||||||| Sbjct 1411 AGATCAGACAATCACTTTTGTCGGCGTATGGAACAGCCAAGACAAGGACAAGCTCGAGAG 1352 Query 180 ATTCCGCCATCAGTTGGAGATATGGAGACTTCTCGACATAAGGCACTATCTGGC-TACGT 238 ||||| |||||||||||| || ||||||||| || |||||||||||||||| | | ||| Sbjct 1351 ATTCCACCATCAGTTGGATATCTGGAGACTTGTCCACATAAGGCACTATCTC-CATCCGT 1293 Query 239 GGCTCC-GCAATAGTTCGTTTGAG-C-AG-G-GCCGGTCCGAATGTTTGGGGCACGAGGG 293 |||| | | ||| ||||||||| | | | | ||| | || || |||||| || || Sbjct 1292 TGCTCTTG-AGTAGCTCGTTTGAGACGATTGTGAAGGT--GTAT-TT-GGGGCATGAAGG 1238 Query 294 AGTGAGGAAAGATAAGGAGATATGTAGGAGTAATTGGGGAGCTCGCAGCCTTTCTCATGA 353 ||||| ||||||||||||| |||||| |||||||||||| ||||| ||||| |||||||| Sbjct 1237 AGTGACGAAAGATAAGGAGTTATGTATGAGTAATTGGGGTGCTCGTAGCCTCTCTCATGA 1178 Query 354 TCAAATTGTTCAGGCGTCACATGATGTCTATGTTTTCTGCAAGCTTGGTGTTAAGGAACG 413 ||| || || || |||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 1177 TCAGATAGTACAAGCGTCACATGATGTCTATGTTTGCTGCAAGCTCGGTGTTAAGGAACG 1118 Query 414 TCTCTGGAAA--GAGAGCTCTAA--TCTTTCTTTTGTTGG 449 |||||||||| | ||||| ||| ||||||||||||||| Sbjct 1117 TCTCTGGAAAATGGGAGCT-TAAAATCTTTCTTTTGTTGG 1079 > AT2G32490.1 | Symbols: | pseudogene of 3'-5' exonuclease domain-containing protein | chr2:13794633-13795213 FORWARD LENGTH=581 Length=581 Score = 449 bits (243), Expect = 8e-126 Identities = 370/430 (86%), Gaps = 14/430 (3%) Strand=Plus/Plus Query 1 ACACCCGGTGGTTCCGATCCTCCACCGGATATTCTCCAACTATGTGTTGGTA-TCCGCTG 59 |||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 147 ACACCCCGTGGTTCCGATCCTCCACCGGATATTCTCCAACTATGTGTTGGTACTC-GCTG 205 Query 60 TCTCATCATCCAGTTGTTTCACTGTAAGCGCATGCCCGACGTCCTTCGAAGTTTCTTGGA 119 ||||||||| ||||||| |||||||||| | | |||||||||||| ||||||||||||| Sbjct 206 TCTCATCATTCAGTTGTCTCACTGTAAGTACGTCCCCGACGTCCTTAGAAGTTTCTTGGA 265 Query 120 GGATGAGACAATCACTTTCGTTGGAGTCTGGAACAGTCAAGACAAGGATAATCTCGAGAG 179 ||| ||||||||||||| || || || |||||||| ||||||||||| || |||||||| Sbjct 266 AGATCAGACAATCACTTTTGTCGGCGTATGGAACAGCCAAGACAAGGACAAGCTCGAGAG 325 Query 180 ATTCCGCCATCAGTTGGAGATATGGAGACTTCTCGACATAAGGCACTATCTGGC-TACGT 238 ||||| |||||||||||| || ||||||||| || |||||||||||||||| | | ||| Sbjct 326 ATTCCACCATCAGTTGGATATCTGGAGACTTGTCCACATAAGGCACTATCTC-CATCCGT 384 Query 239 GGCTCC-GCAATAGTTCGTTTGAG-C-AG-G-GCCGGTCCGAATGTTTGGGGCACGAGGG 293 |||| | | ||| ||||||||| | | | | ||| | || || |||||| || || Sbjct 385 TGCTCTTG-AGTAGCTCGTTTGAGACGATTGTGAAGGT--GTAT-TT-GGGGCATGAAGG 439 Query 294 AGTGAGGAAAGATAAGGAGATATGTAGGAGTAATTGGGGAGCTCGCAGCCTTTCTCATGA 353 ||||| ||||||||||||| |||||| |||||||||||| ||||| ||||| |||||||| Sbjct 440 AGTGACGAAAGATAAGGAGTTATGTATGAGTAATTGGGGTGCTCGTAGCCTCTCTCATGA 499 Query 354 TCAAATTGTTCAGGCGTCACATGATGTCTATGTTTTCTGCAAGCTTGGTGTTAAGGAACG 413 ||| || || || |||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 500 TCAGATAGTACAAGCGTCACATGATGTCTATGTTTGCTGCAAGCTCGGTGTTAAGGAACG 559 Query 414 TCTCTGGAAA 423 |||||||||| Sbjct 560 TCTCTGGAAA 569 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22017274062 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5