BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901459
Length=462
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36110.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 555 2e-157
AT2G32500.1 | Symbols: | Stress responsive alpha-beta barrel d... 466 8e-131
AT2G32490.1 | Symbols: | pseudogene of 3'-5' exonuclease domai... 449 8e-126
> AT2G36110.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr2:15161702-15162676 FORWARD
LENGTH=975
Length=975
Score = 555 bits (300), Expect = 2e-157
Identities = 393/438 (90%), Gaps = 6/438 (1%)
Strand=Plus/Plus
Query 1 ACACCCGGTGGTTCCGATCCTCCACCGGATATTCTCCAACTATGTGTTGGTATCCGCTGT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 368 ACACCCGGTGGTTCCGATCCTCCACCGGATATTCTCCAACTATGTGTTGGTAACCGCTGT 427
Query 61 CTCATCATCCAGTTGTTTCACTGTAAGCGCATGCCCGACGTCCTTCGAAGTTTCTTGGAG 120
|||||||||||||||| ||||||||| ||||| || || ||||||||||||||||||||
Sbjct 428 CTCATCATCCAGTTGTCTCACTGTAAACGCATTCCTGAGGTCCTTCGAAGTTTCTTGGAA 487
Query 121 GATGAGACAATCACTTTCGTTGGAGTCTGGAACAGTCAAGACAAGGATAATCTCGAGAGA 180
||||||||||||||||| || || ||||||||||| |||||| ||| || ||||| |||
Sbjct 488 GATGAGACAATCACTTTTGTCGGCGTCTGGAACAGCCAAGACCAGGGCAAGCTCGAAAGA 547
Query 181 TTCCGCCATCAGTTGGAGATATGGAGACTTCTCGACATAAGGCACTATCTGGCTACGTGG 240
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||
Sbjct 548 TTCCGCCATCAGTTGGAGATATGGAGACTTCTAGACATAAGGCACTATCTGCCTACGAGG 607
Query 241 CTCCGCAATAGTTCGTTTGAGCAGGGCCGGTCCGA--A-TGTTTGGGGCACGAGGGAGTG 297
|||| |||||||||||||||| || | | || | ||||||||| || ||||||||
Sbjct 608 CTCCTCAATAGTTCGTTTGAGAAGATT-G-TA-GAGGAGTGTTTGGGGTACAAGGGAGTG 664
Query 298 AGGAAAGATAAGGAGATATGTAGGAGTAATTGGGGAGCTCGCAGCCTTTCTCATGATCAA 357
|||||||||||||||||||||| |||||||||||| ||||| |||||||| ||||||||
Sbjct 665 AGGAAAGATAAGGAGATATGTATGAGTAATTGGGGTGCTCGTAGCCTTTCCCATGATCAG 724
Query 358 ATTGTTCAGGCGTCACATGATGTCTATGTTTTCTGCAAGCTTGGTGTTAAGGAACGTCTC 417
||||||||||||||| ||||||||||||||| ||||||||| |||||||||||| || ||
Sbjct 725 ATTGTTCAGGCGTCAGATGATGTCTATGTTTGCTGCAAGCTCGGTGTTAAGGAATGTATC 784
Query 418 TGGAAAGAGAGCTCTAAT 435
||||||||| |||| |||
Sbjct 785 TGGAAAGAGCGCTCGAAT 802
> AT2G32500.1 | Symbols: | Stress responsive alpha-beta barrel
domain protein | chr2:13794426-13797227 REVERSE LENGTH=1883
Length=1883
Score = 466 bits (252), Expect = 8e-131
Identities = 394/460 (86%), Gaps = 19/460 (4%)
Strand=Plus/Minus
Query 1 ACACCCGGTGGTTCCGATCCTCCACCGGATATTCTCCAACTATGTGTTGGTA-TCCGCTG 59
|||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1530 ACACCCCGTGGTTCCGATCCTCCACCGGATATTCTCCAACTATGTGTTGGTACTC-GCTG 1472
Query 60 TCTCATCATCCAGTTGTTTCACTGTAAGCGCATGCCCGACGTCCTTCGAAGTTTCTTGGA 119
||||||||| ||||||| |||||||||| | | |||||||||||| |||||||||||||
Sbjct 1471 TCTCATCATTCAGTTGTCTCACTGTAAGTACGTCCCCGACGTCCTTAGAAGTTTCTTGGA 1412
Query 120 GGATGAGACAATCACTTTCGTTGGAGTCTGGAACAGTCAAGACAAGGATAATCTCGAGAG 179
||| ||||||||||||| || || || |||||||| ||||||||||| || ||||||||
Sbjct 1411 AGATCAGACAATCACTTTTGTCGGCGTATGGAACAGCCAAGACAAGGACAAGCTCGAGAG 1352
Query 180 ATTCCGCCATCAGTTGGAGATATGGAGACTTCTCGACATAAGGCACTATCTGGC-TACGT 238
||||| |||||||||||| || ||||||||| || |||||||||||||||| | | |||
Sbjct 1351 ATTCCACCATCAGTTGGATATCTGGAGACTTGTCCACATAAGGCACTATCTC-CATCCGT 1293
Query 239 GGCTCC-GCAATAGTTCGTTTGAG-C-AG-G-GCCGGTCCGAATGTTTGGGGCACGAGGG 293
|||| | | ||| ||||||||| | | | | ||| | || || |||||| || ||
Sbjct 1292 TGCTCTTG-AGTAGCTCGTTTGAGACGATTGTGAAGGT--GTAT-TT-GGGGCATGAAGG 1238
Query 294 AGTGAGGAAAGATAAGGAGATATGTAGGAGTAATTGGGGAGCTCGCAGCCTTTCTCATGA 353
||||| ||||||||||||| |||||| |||||||||||| ||||| ||||| ||||||||
Sbjct 1237 AGTGACGAAAGATAAGGAGTTATGTATGAGTAATTGGGGTGCTCGTAGCCTCTCTCATGA 1178
Query 354 TCAAATTGTTCAGGCGTCACATGATGTCTATGTTTTCTGCAAGCTTGGTGTTAAGGAACG 413
||| || || || |||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1177 TCAGATAGTACAAGCGTCACATGATGTCTATGTTTGCTGCAAGCTCGGTGTTAAGGAACG 1118
Query 414 TCTCTGGAAA--GAGAGCTCTAA--TCTTTCTTTTGTTGG 449
|||||||||| | ||||| ||| |||||||||||||||
Sbjct 1117 TCTCTGGAAAATGGGAGCT-TAAAATCTTTCTTTTGTTGG 1079
> AT2G32490.1 | Symbols: | pseudogene of 3'-5' exonuclease domain-containing
protein | chr2:13794633-13795213 FORWARD LENGTH=581
Length=581
Score = 449 bits (243), Expect = 8e-126
Identities = 370/430 (86%), Gaps = 14/430 (3%)
Strand=Plus/Plus
Query 1 ACACCCGGTGGTTCCGATCCTCCACCGGATATTCTCCAACTATGTGTTGGTA-TCCGCTG 59
|||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 147 ACACCCCGTGGTTCCGATCCTCCACCGGATATTCTCCAACTATGTGTTGGTACTC-GCTG 205
Query 60 TCTCATCATCCAGTTGTTTCACTGTAAGCGCATGCCCGACGTCCTTCGAAGTTTCTTGGA 119
||||||||| ||||||| |||||||||| | | |||||||||||| |||||||||||||
Sbjct 206 TCTCATCATTCAGTTGTCTCACTGTAAGTACGTCCCCGACGTCCTTAGAAGTTTCTTGGA 265
Query 120 GGATGAGACAATCACTTTCGTTGGAGTCTGGAACAGTCAAGACAAGGATAATCTCGAGAG 179
||| ||||||||||||| || || || |||||||| ||||||||||| || ||||||||
Sbjct 266 AGATCAGACAATCACTTTTGTCGGCGTATGGAACAGCCAAGACAAGGACAAGCTCGAGAG 325
Query 180 ATTCCGCCATCAGTTGGAGATATGGAGACTTCTCGACATAAGGCACTATCTGGC-TACGT 238
||||| |||||||||||| || ||||||||| || |||||||||||||||| | | |||
Sbjct 326 ATTCCACCATCAGTTGGATATCTGGAGACTTGTCCACATAAGGCACTATCTC-CATCCGT 384
Query 239 GGCTCC-GCAATAGTTCGTTTGAG-C-AG-G-GCCGGTCCGAATGTTTGGGGCACGAGGG 293
|||| | | ||| ||||||||| | | | | ||| | || || |||||| || ||
Sbjct 385 TGCTCTTG-AGTAGCTCGTTTGAGACGATTGTGAAGGT--GTAT-TT-GGGGCATGAAGG 439
Query 294 AGTGAGGAAAGATAAGGAGATATGTAGGAGTAATTGGGGAGCTCGCAGCCTTTCTCATGA 353
||||| ||||||||||||| |||||| |||||||||||| ||||| ||||| ||||||||
Sbjct 440 AGTGACGAAAGATAAGGAGTTATGTATGAGTAATTGGGGTGCTCGTAGCCTCTCTCATGA 499
Query 354 TCAAATTGTTCAGGCGTCACATGATGTCTATGTTTTCTGCAAGCTTGGTGTTAAGGAACG 413
||| || || || |||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 500 TCAGATAGTACAAGCGTCACATGATGTCTATGTTTGCTGCAAGCTCGGTGTTAAGGAACG 559
Query 414 TCTCTGGAAA 423
||||||||||
Sbjct 560 TCTCTGGAAA 569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22017274062
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5