BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg901493

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G36470.1 | Symbols:  | Plant protein of unknown function (DU...   617    2e-176


> AT2G36470.1 | Symbols:  | Plant protein of unknown function (DUF868) 
| chr2:15299362-15300990 REVERSE LENGTH=1629
Length=1629

 Score =  617 bits (334),  Expect = 2e-176
 Identities = 409/445 (92%), Gaps = 6/445 (1%)
 Strand=Plus/Plus

Query  45    AGGATCAAGAAAGTTGACTTCTTCCTCCGGTTCACTCAACGCGGAGATTCTTTGGGATCT  104
             |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct  877   AGGATCAAGAAAGTTGACTTCTTCCTCCGGTTCACTCAACGCCGAGATCCTCTGGGATCT  936

Query  105   ATCGGAAGCAGAGTACGAAAACTACGGACCTGAACCAATAAGAAGATTCTTCGTCGTCGT  164
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  937   ATCGGAAGCAGAGTACGAAAACAACGGACCTGAACCAATAAGAAGATTCTTCGTCGTCGT  996

Query  165   CGTGGTGAATTCCGAGATTACGCTCAGAATCGGCGACGTTGACCGCAAGCGAGACACGTC  224
             ||| || |||||||||||||| ||| || ||||||||||||||| | |||||||||||||
Sbjct  997   CGTTGTAAATTCCGAGATTACCCTCGGAGTCGGCGACGTTGACCACGAGCGAGACACGTC  1056

Query  225   ATCATCGTCGT-G-G-CGAGTCTCAAAAACAGAGAGATTCTCAGGGACTTGTTGGCTCAC  281
             ||||||||||| | | |||||||||||||| ||||||||||| || ||||||||||||||
Sbjct  1057  ATCATCGTCGTCGTGGCGAGTCTCAAAAACGGAGAGATTCTCTGGAACTTGTTGGCTCAC  1116

Query  282   GACGAAGGCTCAATTCTCCGACGTTGGAACTAAACACGAGATTCAGATTCAATGCGACGG  341
             |||||| ||||||||||||||||| ||||  ||||||||||| ||||||||||||| |||
Sbjct  1117  GACGAAAGCTCAATTCTCCGACGTCGGAAGGAAACACGAGATACAGATTCAATGCGGCGG  1176

Query  342   CGGCGGGGGAGGAGGAG-A-AG-AAGGGTATTTATGGAAATTGAAAAGTCCTGAAACGAT  398
              || || |||||||||| | || ||||||||||||||||| |||||||||||||||||||
Sbjct  1177  AGGAGGAGGAGGAGGAGGAGAGGAAGGGTATTTATGGAAAGTGAAAAGTCCTGAAACGAT  1236

Query  399   GTCGGTTTATGTGGATAAGAGGAAAGTGTTTTCGGTGAAGAAGATAAAGTGGAATTTTAG  458
             |||||||||||| |||||||||||||||||||||||||||||| | |||||||| |||||
Sbjct  1237  GTCGGTTTATGTTGATAAGAGGAAAGTGTTTTCGGTGAAGAAGCTTAAGTGGAACTTTAG  1296

Query  459   AGGGAATCAAACGATGTTCTTCGAT  483
             |||||||||||| ||||| ||||||
Sbjct  1297  AGGGAATCAAACCATGTTTTTCGAT  1321



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23007239326


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5