BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901512
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53000.1 | Symbols: AtPP2-A15, PP2-A15 | phloem protein 2-A1... 604 3e-172
> AT3G53000.1 | Symbols: AtPP2-A15, PP2-A15 | phloem protein 2-A15
| chr3:19654068-19656080 FORWARD LENGTH=1392
Length=1392
Score = 604 bits (327), Expect = 3e-172
Identities = 722/909 (79%), Gaps = 42/909 (5%)
Strand=Plus/Plus
Query 1 ATGGGGTCGTCCTTCTCGAACCTCAACGGTGACACTAACGGTCTAGCAACCGGACC-GAG 59
||||| |||||||| ||||| || |||| | || || ||| | || | ||||| | |
Sbjct 211 ATGGGTTCGTCCTTGTCGAATCTAAACGACGGGACGAATGGTTTGGCTATGGGACCTG-G 269
Query 60 TCTCGGAGATATACCGGAGAGCTGCGTAGCTTCCGTGATTCT-TCACCTGACTCCGCCGG 118
|||||| ||||||||||| || || || |||| ||| || | | | |||||||| ||||
Sbjct 270 TCTCGGCGATATACCGGAAAGTTGTGTCGCTTGTGTGTTTATGT-ATCTGACTCCACCGG 328
Query 119 AGATTTGCAATCTAGCTCGCTTGAATCGAGCATTTCGCGGCGCGGCTTCGTCAGATTCTG 178
||||||||||||| ||| | |||||||| | ||||| || |||||||| || |||||||
Sbjct 329 AGATTTGCAATCTGGCTGGATTGAATCGTTCTTTTCGTGGTGCGGCTTCTTCGGATTCTG 388
Query 179 TTTGGGAGAAGAAGCTTCCATG-TAATTA-CAAGGATTTGCTTGATCTATTACCGCCGGA 236
||||||| ||||||||||| | ||||| | ||||| |||||||| |||| ||||||||
Sbjct 389 TTTGGGAAAAGAAGCTTCC-GGAGAATTATC-AGGATCTGCTTGATTTATTGCCGCCGGA 446
Query 237 GAGGTATCAGAGTCTCTCTAAGAAGGATATATTCGCAT-TGCTCTCTCGTCCTA-TCCGT 294
||||||||| |||||||| ||||| ||||| ||||| | |||| |||||||| | ||| |
Sbjct 447 GAGGTATCATAGTCTCTCGAAGAAAGATATCTTCGC-TGTGCTTTCTCGTCCAATTCC-T 504
Query 295 CTCGACGATGGTCATAAGCAAGTGTGGATTGATAGA-TCGACAGGACGGGTTTGTATGGC 353
| || |||| | ||||| |||| |||||||||||| | |||||||| |||||||||||
Sbjct 505 TTTGATGATGATAATAAGGAAGTATGGATTGATAGAGT-TACAGGACGAGTTTGTATGGC 563
Query 354 CATTTCGGCAAGAGGAATGGCGATAACTGGAATCGAAGATCGCAGATATTGGAATTGGAC 413
||||| || ||||||||| | || |||||||| ||||| || ||||||||||| ||||
Sbjct 564 GATTTCTGCTAGAGGAATGTCTATTACTGGAATTGAAGACCGGAGATATTGGAACTGGAT 623
Query 414 TGCAACAGAAGAATCAAGGTTCCATGTTGTAGCCTACTTACAGCAGATTTGGTGGTTTGA 473
| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 TCCAACGGAAGAATCTAGGTTCCATGTTGTAGCCTACTTACAGCAGATTTGGTGGTTTGA 683
Query 474 AGTAGATGGGAT-GATGAGTTTCAATCTTCCTCCTGGTATATACTGTCTATCATTCAGAA 532
||| ||||| | | |||| ||| |||| || |||||| |||||| ||||||||||||||
Sbjct 684 AGTTGATGGAACAG-TGAGATTCCATCTCCCACCTGGTGTATACTCTCTATCATTCAGAA 742
Query 533 TACACCTCGGAAGATTCTCGAAAAGGTT-GGGAAGACGAGTTTGCCATTTTGAACACACA 591
| || || || |||||| | |||||| | |||| |||| || ||||| ||||||| |||
Sbjct 743 TCCATCTAGGGAGATTCACAAAAAGGCTAGGGA-GACGTGTGTGCCACTTTGAACTCACT 801
Query 592 CACGGTTGGGAGT-TAAAGCCTGTGCGGTTTTCACTCTCAACTTCAGATGGGCAAGAGGC 650
|| |||||||| | ||||||| || ||||||| || || ||||| ||||| ||||| ||
Sbjct 802 CATGGTTGGGA-TCTAAAGCCGGTAAGGTTTTCGCTTTCGACTTCTGATGGTCAAGAAGC 860
Query 651 GTCATGTGAATACTACTTGG-CTGA-GAA-AG-GCGGTGAGGAAATGGGTAGGGAACAAA 706
||||||||||| ||||||| | || | | || | || | | | || | |||| |
Sbjct 861 ATCATGTGAATATTACTTGGAC-GACGTAGAGAGAAACGAAGCACTTGGAA---AACACA 916
Query 707 AAGGAGGAGGAGAGTTCTGGAGAGAGTATAAGGTTGGAGAATTTGTTGTGAGTTGCTCAG 766
|| | || | ||||| ||||||| |||||||||||| | || | | | ||||
Sbjct 917 AACGCGGTT-A-----CTGGATCGAGTATAGGGTTGGAGAATTCATAGTAAATGGATCAG 970
Query 767 AACCATCAACCGAAGTCCGATGGTCGATGAAACAGATCGATTGCACACATTCGAAAGGCG 826
||||||| || ||| ||| |||||||||||||||||| || ||||| || |||||||| |
Sbjct 971 AACCATCGACAGAAATCCAATGGTCGATGAAACAGATTGACTGCACGCACTCGAAAGGAG 1030
Query 827 GGATATGTGTGGACTCAGTCTTCATCATCCCAATCG---ATGT-AAAGCAACGCAAGAAA 882
|| ||||||| || ||||||||||| | |||||| | |||| |||| ||| ||| ||
Sbjct 1031 GGTTATGTGTTGATTCAGTCTTCATAAACCCAATTGGTGATGTGAAAG-AACACAA-AA- 1087
Query 883 AGGAAAGCT 891
||||||||
Sbjct 1088 -GGAAAGCT 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44105581066
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5