BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg901513 Length=540 Score E Sequences producing significant alignments: (Bits) Value AT2G36610.1 | Symbols: ATHB22, HB22 | homeobox protein 22 | chr... 693 0.0 > AT2G36610.1 | Symbols: ATHB22, HB22 | homeobox protein 22 | chr2:15349327-15350088 FORWARD LENGTH=558 Length=558 Score = 693 bits (375), Expect = 0.0 Identities = 507/565 (90%), Gaps = 32/565 (6%) Strand=Plus/Plus Query 1 ATGGAATATTGGAGCAGCTCCTTCATCGATGGCGCTTCTTCTTCCAACTTCATCTCTCCT 60 ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct 1 ATGGAATATTGGAGCAGCTCCTTCATCGATGGCGCGTCTTCTTCCAGCTTCATCTCTCCT 60 Query 61 TTCTATAACTTTGACCATTTTTCAGGAAACCAAGACAACAGATGTCTCTCGTCAGGTACT 120 ||||||||||||||||||||||||||||||||||||||||||||| | | |||||| Sbjct 61 TTCTATAACTTTGACCATTTTTCAGGAAACCAAGACAACAGATGT-T-T----AGGTACA 114 Query 121 ATGGTGAGTGCACAACAAGATATGCTTCAT-TTCCCTCTAGCAATGGTAGAGAGTGGCTA 179 ||| || |||||||||||||||| |||||| |||| |||||||||||||||||||||||| Sbjct 115 ATGATGGGTGCACAACAAGATATACTTCATGTTCC-TCTAGCAATGGTAGAGAGTGGCTA 173 Query 180 TGGAGAAGAAAGCAACAGTTTTAATGgaaaagagaagagaaagaagaagaTGACGAGCGA 239 |||||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||||| Sbjct 174 TGGAGAAGAAAGCAACAGTTTTAATGGACAGGAGAAGAAAAAAAAGAAGATGACGAGCGA 233 Query 240 GCAACTAAAGTTCCTCGAGACAAGTTTCCAAGAAGAGATAAAGCTTAATCCGGACAGGAA 299 ||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 234 GCAGCTAAAGTTCCTCGAGAGAAGTTTCCAAGAAGAGATAAAGCTGAATCCGGACAGGAA 293 Query 300 GATGAAGCTG--TCC--A-A--A-GA--AA--T--C----G----GG--CTGCAGCCGAG 335 |||||||||| ||| | | | || || | | | || ||||||||||| Sbjct 294 GATGAAGCTGAATCCGGACAGGAAGATGAAGCTGTCCAAAGAACTGGGGCTGCAGCCGAG 353 Query 336 ACAGATTGCGGTTTGGTTCCAAAACAGGAAAGCCAGGTGGAAGAACAAACAGCTCGAGCA 395 ||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| Sbjct 354 ACAGATTGCGGTTTGGTTCCAGAACAGGAAAGCCAGGTGGAAGAACAAACAACTTGAGCA 413 Query 396 TCTCTATGAATCACTAAGGCAAGAGTTTGATGTTGTCTCTAGAGAAAAGGAATTGCTACA 455 |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 414 TCTCTATGAATCACTAAGACAAGAGTTTGATATTGTCTCTAGAGAAAAGGAATTGCTACA 473 Query 456 AGAAGAGCTAACACAACTGAAATCGATGATAAGGGAGAATGGTTCAAGCAAGAAGAAGCA 515 ||||||||||| |||||||||||| |||||||| ||| || ||||| |||||||||| || Sbjct 474 AGAAGAGCTAATACAACTGAAATCAATGATAAGAGAGGATAGTTCATGCAAGAAGAAACA 533 Query 516 AACCTGGGAAAAAACCTGCAGCTGA 540 ||||||||||||| ||||||||||| Sbjct 534 AACCTGGGAAAAAGCCTGCAGCTGA 558 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25870585705 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5