BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901513
Length=540
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36610.1 | Symbols: ATHB22, HB22 | homeobox protein 22 | chr... 693 0.0
> AT2G36610.1 | Symbols: ATHB22, HB22 | homeobox protein 22 | chr2:15349327-15350088
FORWARD LENGTH=558
Length=558
Score = 693 bits (375), Expect = 0.0
Identities = 507/565 (90%), Gaps = 32/565 (6%)
Strand=Plus/Plus
Query 1 ATGGAATATTGGAGCAGCTCCTTCATCGATGGCGCTTCTTCTTCCAACTTCATCTCTCCT 60
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1 ATGGAATATTGGAGCAGCTCCTTCATCGATGGCGCGTCTTCTTCCAGCTTCATCTCTCCT 60
Query 61 TTCTATAACTTTGACCATTTTTCAGGAAACCAAGACAACAGATGTCTCTCGTCAGGTACT 120
||||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 61 TTCTATAACTTTGACCATTTTTCAGGAAACCAAGACAACAGATGT-T-T----AGGTACA 114
Query 121 ATGGTGAGTGCACAACAAGATATGCTTCAT-TTCCCTCTAGCAATGGTAGAGAGTGGCTA 179
||| || |||||||||||||||| |||||| |||| ||||||||||||||||||||||||
Sbjct 115 ATGATGGGTGCACAACAAGATATACTTCATGTTCC-TCTAGCAATGGTAGAGAGTGGCTA 173
Query 180 TGGAGAAGAAAGCAACAGTTTTAATGgaaaagagaagagaaagaagaagaTGACGAGCGA 239
|||||||||||||||||||||||||||| | ||||||| ||| |||||||||||||||||
Sbjct 174 TGGAGAAGAAAGCAACAGTTTTAATGGACAGGAGAAGAAAAAAAAGAAGATGACGAGCGA 233
Query 240 GCAACTAAAGTTCCTCGAGACAAGTTTCCAAGAAGAGATAAAGCTTAATCCGGACAGGAA 299
||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 234 GCAGCTAAAGTTCCTCGAGAGAAGTTTCCAAGAAGAGATAAAGCTGAATCCGGACAGGAA 293
Query 300 GATGAAGCTG--TCC--A-A--A-GA--AA--T--C----G----GG--CTGCAGCCGAG 335
|||||||||| ||| | | | || || | | | || |||||||||||
Sbjct 294 GATGAAGCTGAATCCGGACAGGAAGATGAAGCTGTCCAAAGAACTGGGGCTGCAGCCGAG 353
Query 336 ACAGATTGCGGTTTGGTTCCAAAACAGGAAAGCCAGGTGGAAGAACAAACAGCTCGAGCA 395
||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 354 ACAGATTGCGGTTTGGTTCCAGAACAGGAAAGCCAGGTGGAAGAACAAACAACTTGAGCA 413
Query 396 TCTCTATGAATCACTAAGGCAAGAGTTTGATGTTGTCTCTAGAGAAAAGGAATTGCTACA 455
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 414 TCTCTATGAATCACTAAGACAAGAGTTTGATATTGTCTCTAGAGAAAAGGAATTGCTACA 473
Query 456 AGAAGAGCTAACACAACTGAAATCGATGATAAGGGAGAATGGTTCAAGCAAGAAGAAGCA 515
||||||||||| |||||||||||| |||||||| ||| || ||||| |||||||||| ||
Sbjct 474 AGAAGAGCTAATACAACTGAAATCAATGATAAGAGAGGATAGTTCATGCAAGAAGAAACA 533
Query 516 AACCTGGGAAAAAACCTGCAGCTGA 540
||||||||||||| |||||||||||
Sbjct 534 AACCTGGGAAAAAGCCTGCAGCTGA 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25870585705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5