BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901517
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36650.1 | Symbols: | unknown protein; Has 35333 Blast hits... 1611 0.0
> AT2G36650.1 | Symbols: | unknown protein; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:15359915-15361328
FORWARD LENGTH=1335
Length=1335
Score = 1611 bits (872), Expect = 0.0
Identities = 1095/1199 (91%), Gaps = 29/1199 (2%)
Strand=Plus/Plus
Query 1 ATGGATGGTTCA---GGTCCAAGAGATGGAGGAGCTATGAAGCCGGTGATTCTGAGAGTT 57
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 80 ATGGATGGTTCAGCTGGTCCAAGAGATGGAGGAGCTATGAAGCCGGTGATTTTGAGAGTT 139
Query 58 TGTGTTGCAATTGTATTATCAGCAACTGGTTTGATTTTGGCTAGGTTTGTGTCTCGGAAT 117
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 TGTGTTGCTATTGTATTATCAGCAACTGGTTTGATTTTGGCTAGGTTTGTGTCTCGGAAT 199
Query 118 GAAGATAATGAGGTAACTTCTTCTACAAGCAATCCGGAGTCTTCTTCATCACCTAGCAGA 177
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 200 GAAGATAACGAGGTAACTTCTTCTACAAGTAATCCAGAGTCTTCTTCATCACCTAGCAGA 259
Query 178 AGAAAT-GATC-AGGAAGAAGAAACAGAGAG-CGTGGATCATCAAAAGCAAGAGATTCTC 234
|||| || | ||||||||||| ||||||| | | |||| || |||||||||||||||
Sbjct 260 -GAAAACGA-CGAGGAAGAAGAAGCAGAGAGTCC-GAATCAGCAGAAGCAAGAGATTCTC 316
Query 235 AGTTTAAAATCCAGATTCGAGGAGCTTAAAAGGAAGGAATACGAGATGGAGTTGCAATTC 294
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 317 AGCTTAAAATCCAGATTCGAGGAGCTTCAAAGGAAGGAATACGAGATGGAGTTGCATTTC 376
Query 295 GAGCGGTTTTGTAACTTGAAAGATCAAGAAGTGATGCTTATGGAGCATAAAAGCATGTTG 354
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 377 GAGCGGTTTTGTAACTTGAAAGATCAAGAAGTCATGCTTATTGAGCATAAAAGCATATTG 436
Query 355 AGTCTTGAGAAATCTCAATTAGATTTCTTCCGTAAAGAAGTTTTAGCGATGGAGGAAGAA 414
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 AGTCTTGAGAAAGCTCAATTAGATTTCTTCCGTAAAGAAGTTTTAGCGATGGAGGAAGAA 496
Query 415 CATAAGAGGGGACAAGATTTGGTGATTGTGTATCTCAAA-TTGGTGGGAGAAATCCAAGA 473
|| |||||||| |||| |||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 497 CACAAGAGGGGTCAAGCTTTGGTGATTGTGTATCTCAAACTTG-TGGGAGAAATCCAAGA 555
Query 474 GTTGAGATCAGAGAATGTGTTGCTTGAGGGGAAAGCAAAGAAGCTTAGGAGAAGATCAAA 533
||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||
Sbjct 556 GTTGAGATCAGAGAATGGGTTGCTTGAGGGGAAAGCAAAGAAGCTTAGAAGAAAATCAAA 615
Query 534 GCAATTATACCGAGTTG-CAAACGAGAAGAGCAGGAGGATTATTGGCGTGGAAAAAGAGT 592
||| |||||||| |||| ||| ||||| | ||||| |||||||||||||||||||||||
Sbjct 616 GCAGTTATACCGTGTTGTCAA-CGAGA-G--CAGGAAGATTATTGGCGTGGAAAAAGAGT 671
Query 593 TCTTGAAGTGTGTTGATGAATTGGAGACGAAGAATTACATTTTGAAAGAACTTGAAGGTG 652
||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct 672 TCTTGAAGTGTGTTGATGAATTGGAGACGAAGAATAACATTGTGAAGGAACTTGAAGGTA 731
Query 653 AAGTTAAAGACATGAAAGCTTACGCTGATGTGCTGCAAGAGGAAAAGGAAGAATTATTCA 712
|||| ||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 732 AAGTCAAAGACATGGAAGCTTACGTTGATGTGTTGCAAGAGGAAAAGGAAGAATTATTCA 791
Query 713 TAAAGTCTTCAAATTCAACATCAGAGATGGTGAGTCTAGAAGATTATACAAGGGTAGTAG 772
| ||||| ||||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct 792 TGAAGTCGTCAAATTCAACATCAGAGATGGTGAGTGTAGAAGATTATAGAAGGATAGTAG 851
Query 773 AAGAGTATGAGGAATTGAAGAAGGATTATGCAAATGGAGTGAAGGAAGTGATCAACCTGA 832
||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 852 AAGAGTACGAGGAATTAAAGAAGGATTATGCGAATGGAGTGAAGGAAGTGATTAACCTGA 911
Query 833 GATGGAGCAATGCTTGTTTGAGACACGAGGTAATGAGAAATGGAGCCAATTTTGGGGAAA 892
||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||
Sbjct 912 GATGGAGCAATGCTTGTTTGAGACACGAGGTGATGAGAAATGGAACCAACTTTGGGGAAA 971
Query 893 TCATGTTTTCTCCAAATGGAAACTTGCAAGAGATGGGTTTAGAGAACGTTCAAGCAGATG 952
|| ||||||||||||||||||||||||| ||| ||||||| ||| | | ||||| |||
Sbjct 972 TCGTGTTTTCTCCAAATGGAAACTTGCATGAGCTGGGTTTGGAGGATGATCAAGTGGATA 1031
Query 953 CTGCTCAGGCATTGATGTCG-GTAGCTTATGAGAAACATGAAGATTGTCACAATAATCAT 1011
||||| |||||||||| | |||||| ||||| |||||||||| | | | | |||||
Sbjct 1032 ATGCTCTGGCATTGATGA-GAGTAGCTAATGAGCAACATGAAGA--G--A-A-TCATCAT 1084
Query 1012 CATCATGAATCTTCGAGGAGGAAGAGGTTGATGAAGAAGCTGAAGAAATGGGTTGAAGGA 1071
|| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1085 CAGCATGAATCTTCGAGGAGGAAGAGATTGATGAAGAAGTTGAAGAAATGGGTTGAAGGA 1144
Query 1072 AATGAGAAGGGAAAATCAAAAGCAGAGGAA--AGATGTTTCGGAAGACACTCTTTGACAG 1129
|||||||| ||||||||||||||||| ||| ||| | |||||| |||| ||||||||
Sbjct 1145 AATGAGAAAGGAAAATCAAAAGCAGAAGAAGCAGAAGAAGCGGAAGGCACTATTTGACAG 1204
Query 1130 TGGAACCTGAAGAAGAACGTATATTATTTCATTCAAGAAGGTCTTGTTCTAGTGTGTAA 1188
||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 1205 TGGAACCTGAAGAAGAACG-A-AC-ATTTCATTCAAGAAGGTCTTGTTCTAGTGTGTAA 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58333033290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5