BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901520
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36680.1 | Symbols: | Modifier of rudimentary (Mod(r)) prot... 989 0.0
> AT2G36680.1 | Symbols: | Modifier of rudimentary (Mod(r)) protein
| chr2:15368798-15370846 REVERSE LENGTH=959
Length=959
Score = 989 bits (535), Expect = 0.0
Identities = 618/657 (94%), Gaps = 9/657 (1%)
Strand=Plus/Plus
Query 1 ATGTTCAATTTCTGGGGATCAAAAGAACAACAACAAGGGC-A----G----TCTCCAGAA 51
||||||||||||||||||||||||||||| |||||||| | | | |||||||||
Sbjct 121 ATGTTCAATTTCTGGGGATCAAAAGAACAGCAACAAGGACAATCTCGTCCTTCTCCAGAA 180
Query 52 GCGTCTGCAACACCGTGGTATTCACCATCTCTGGTCACTTCGCCTAGCTCATCTCGGTCT 111
|| |||||||||||||||||||| || ||||| ||||| || ||||||||||| ||| ||
Sbjct 181 GCTTCTGCAACACCGTGGTATTCGCCGTCTCTTGTCACCTCTCCTAGCTCATCCCGGCCT 240
Query 112 CAAACATCAGGGCAGATTCCGCCACATGTTTCACCAGGGGAAGCCGCCGGCATTATTGCC 171
||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 241 CAAACCTCAGGGCAGATTCCATCACATGTTTCACCAGGTGAAGCCGCCGGCATTATTGCC 300
Query 172 ATTTTAAAAGACAAAAGTGTGGATGAGCTTAGGAAGCTTCTGTCTGACAAGGATGCGTAT 231
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 ATTTTAAAAGACAAAAGTGTGGATGAGCTTAGGAAGCTTCTCTCTGACAAGGATGCGTAT 360
Query 232 CAACAGTTTTTACAGTCGCTTGACCAGGTCACTATTCAAAACAATATAAGAGAAGAGCTT 291
||||||||| | || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 CAACAGTTTCTGCACTCGCTTGACCAGGTCACTATTCAAAACAATATCAGAGAAGAGCTT 420
Query 292 CGCAAAGAAACATTGCATCTAGCTAGAGAAAACTTGGAGAAGGAACCACAGATAGTGGAG 351
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGCAAAGAAACGTTACATCTAGCTAGAGAAAACTTGGAGAAGGAACCACAGATAGTGGAG 480
Query 352 CTCAGAAACCAATGCAGAATAATCCGGACATCCGAGCTTGCGACTGCTCAAGAGAGGCTC 411
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 481 CTCAGAAACCAATGCAGAATAATCCGTACATCCGAGCTTGCGACTGCTCAAGAGAAGCTC 540
Query 412 AATGAGCTTGAGAATCAAAGAGAAGAGATCCTCAAATTCTACTCTCCAGGTTCTCTTCTT 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AATGAGCTTGAGAATCAAAGAGAAGAGATCCTCAAATTCTACTCTCCAGGTTCTCTTCTT 600
Query 472 CATAGACTTCAAGATGCTATGAACAAGGTCGATGAAGAATCCGAGGAACTGCAACAGAAG 531
|||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||||
Sbjct 601 CATAGACTTCAAGATGCTATGAACCAGGTGGATGAAGAATCAGAGGAGCTGCAACAGAAG 660
Query 532 TTTATGGAGAAGGATATTGACACAGCTGCATTTGTGCAGAAATACAAAAAGCTAAGAAGC 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTTATGGAGAAGGATATTGACACAGCTGCATTTGTGCAGAAATACAAAAAGCTAAGAAGC 720
Query 592 AAGTATCATCGACGGGCTTTGATTCACCTCGCTGCTAAAACTTCATCTATCGGTTGA 648
|||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 721 AAGTATCATCGACGGGCTTTGATTCATCTCGCTGCTAAAACTTCATCTATTGGCTGA 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31295873581
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5