BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg901551

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22630.1 | Symbols: ADT5 | arogenate dehydratase 5 | chr5:75...   161    3e-39


> AT5G22630.1 | Symbols: ADT5 | arogenate dehydratase 5 | chr5:7524342-7526160 
FORWARD LENGTH=1819
Length=1819

 Score =  161 bits (87),  Expect = 3e-39
 Identities = 131/152 (86%), Gaps = 4/152 (3%)
 Strand=Plus/Plus

Query  187  CATGGATCTACTCTCCGTGTAGCGTATCAAGGAGTTCTC-GGCGTGTATTTTGAAGCTAC  245
            |||||||||||||| ||||| |||||||||||||||| | || | ||| |  |||||  |
Sbjct  667  CATGGATCTACTCTTCGTGTCGCGTATCAAGGAGTTC-CGGGAGCGTACTCCGAAGCGGC  725

Query  246  CACCGGAAAAGCATATCCGAAA-TCTGAAGATATTCGGTGTGATCAATTCGATGTTGCGT  304
            | |||||||||| || || ||| || |||| |||||  |||||||||||||| |||||||
Sbjct  726  CGCCGGAAAAGCTTA-CCCAAACTCCGAAGCTATTCCTTGTGATCAATTCGACGTTGCGT  784

Query  305  TTCAGGCGGTGGAGCTTTGGATCGCCGATCGT  336
            ||||||||||||||||||||||||||||||||
Sbjct  785  TTCAGGCGGTGGAGCTTTGGATCGCCGATCGT  816



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16889963664


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5