BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901560
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36200.2 | Symbols: | P-loop containing nucleoside triphosp... 429 2e-119
> AT2G36200.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:15179869-15185314
REVERSE LENGTH=3457
Length=3457
Score = 429 bits (232), Expect = 2e-119
Identities = 311/346 (90%), Gaps = 18/346 (5%)
Strand=Plus/Plus
Query 181 TTCTCACTTGGAGGCAGTGCAGAATGTAGTTCGGTTGCACAAGGCAAACTG-GAATATGC 239
|||||||||||||||||||||||||||||||||||| |||||||||||| | |||| ||
Sbjct 2018 TTCTCACTTGGAGGCAGTGCAGAATGTAGTTCGGTTACACAAGGCAAAC-GCGAAT--GC 2074
Query 240 TTGTCTTGAGGAAGTTTCAGCATTGACTACTTCAAGTGCATGTTCCATTGATGAGTTTCT 299
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 2075 TTGTCTTGAGGAAGTTTCAGCATTGACGACTTCAAGTGCATGTTCCATTGATGAATTTCT 2134
Query 300 TGCTTCAGGAGATGAGACAACAGT-GTCGCTATTTGATGAACTTCAGAGCACTCTCTCGT 358
||||||||||||||| |||||| | |||| ||||||||||||||||||| |||||||||
Sbjct 2135 TGCTTCAGGAGATGAAACAACA-TCGTCGTTATTTGATGAACTTCAGAGTGCTCTCTCGT 2193
Query 359 CCCATCAGGGAGAAATGGTTCTCTTTGCGAGGGAACTGAGGCAGAGGTTCCACACAAC-A 417
|||||||||||||||||| ||||||||||||||||||||| || |||||||||||||| |
Sbjct 2194 CCCATCAGGGAGAAATGGCTCTCTTTGCGAGGGAACTGAGACAAAGGTTCCACACAACGA 2253
Query 418 -----CA------GGAGATGTTTGAATACACAAGTATGTTCTTTCAGAAGCTTATGGAAG 466
|| |||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 2254 TGGAGCAAACTCAGGAGATGTCTGAATACACAAGTACGTTCTTTCAGAAGCTTATGGAAG 2313
Query 467 AGTCTAAAAATTCTGAGAGTCGTGTTGCAGAGGCAAATAATACTCA 512
||||||||||| |||||| ||||| ||||||||||||| ||| |||
Sbjct 2314 AGTCTAAAAATGCTGAGACTCGTGCTGCAGAGGCAAATGATAGTCA 2359
Score = 217 bits (117), Expect = 2e-55
Identities = 155/173 (90%), Gaps = 4/173 (2%)
Strand=Plus/Plus
Query 562 TCAA-ACTTCATGA-TTTCAAAGATGCCGTCTCTTCCAACAAAAATTGTCTTGCACGAAC 619
|||| ||| ||| | ||| ||||||||||||||||||||||||| || ||||| ||||||
Sbjct 2487 TCAAGACTCCATAACTTT-AAAGATGCCGTCTCTTCCAACAAAACTT-TCTTGGACGAAC 2544
Query 620 ATGTCTCTGCTGTTAATAATCTGACTAATGATGCAAAAATAAAGCGGGAGACATTCTCCA 679
||||||||||||||||||||||||| || || ||||||| |||| |||||||||| ||||
Sbjct 2545 ATGTCTCTGCTGTTAATAATCTGACGAAAGACGCAAAAAGAAAGTGGGAGACATTTTCCA 2604
Query 680 TACAAGCTGAGGATGAAGCCAGAGAAGGTGCTGACTTCTCAGCTGCAAAACAT 732
| ||||||||| |||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2605 TGCAAGCTGAGAATGAAGCCAGAGAAGGTGCTGATTTCTCGGCTGCAAAACAT 2657
Score = 100 bits (54), Expect = 2e-20
Identities = 56/57 (98%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 509 CTCAGTCAAAATCTGATACAGATAAACTTATAGCAGATTTAACTAACCTAGTCTCAA 565
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2398 CTCAGTCAAAATCTGATACAGATAAACTTATTGCAGATTTAACTAACCTAGTCTCAA 2454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45763307917
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5