BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg901563

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G36250.1 | Symbols: FTSZ2-1, ATFTSZ2-1 | Tubulin/FtsZ family...   285    3e-76


> AT2G36250.1 | Symbols: FTSZ2-1, ATFTSZ2-1 | Tubulin/FtsZ family 
protein | chr2:15197369-15200603 REVERSE LENGTH=1948
Length=1948

 Score =  285 bits (154),  Expect = 3e-76
 Identities = 202/226 (89%), Gaps = 0/226 (0%)
 Strand=Plus/Plus

Query  55   AGAGAGGAAACGTCTTCTGGTCCTGTTGTCGAGGATTTTGAAGAGCCATCTGCTCCGAGC  114
            ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct  502  AGAAAGGAAACGTCTTCTGGACCTGTTGTCGAGGATTTTGAAGAGCCATCTGCTCCGAGT  561

Query  115  AGTTACAATGACGCAAGGATTAAAGTTATTGCTGTGGGAGGCAGTGGATCAAATGTTGTG  174
            |  |||||||| || |||||||| ||||||| |||||||||  |||||||||||| ||||
Sbjct  562  AACTACAATGAGGCGAGGATTAAGGTTATTGGTGTGGGAGGTGGTGGATCAAATGCTGTG  621

Query  175  AATCATATGATAGAGAGTGAAATGTCATGCGTGGAATTCTGGATTGTGAATACCGATATT  234
            |||| |||||||||||||||||||||| | ||||| ||||||||||| || || ||||| 
Sbjct  622  AATCGTATGATAGAGAGTGAAATGTCAGGTGTGGAGTTCTGGATTGTCAACACTGATATC  681

Query  235  CAGGCTATGAGAATGTCTCCCGTTTTACCAGATAATAGGTTGCAAA  280
            |||||||||||||||||||| ||||| || ||||||||||| ||||
Sbjct  682  CAGGCTATGAGAATGTCTCCTGTTTTGCCTGATAATAGGTTACAAA  727


 Score =  113 bits (61),  Expect = 1e-24
 Identities = 73/79 (92%), Gaps = 0/79 (0%)
 Strand=Plus/Plus

Query  408   GTCTACTCCGGTAATGGAAGCATTTAATCTAGCTGATGATATACTTCATCGGGGGGTTAG  467
             ||||||||||||||  ||||||||||||||||||||||||||||| | || ||||||| |
Sbjct  1071  GTCTACTCCGGTAACAGAAGCATTTAATCTAGCTGATGATATACTCCGTCAGGGGGTTCG  1130

Query  468   TGGGATATCTGATATCATT  486
             |||||||||||||||||||
Sbjct  1131  TGGGATATCTGATATCATT  1149



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23610049090


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5