BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901566
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37020.2 | Symbols: | Translin family protein | chr2:155464... 1112 0.0
> AT2G37020.2 | Symbols: | Translin family protein | chr2:15546424-15548909
FORWARD LENGTH=1137
Length=1137
Score = 1112 bits (602), Expect = 0.0
Identities = 659/686 (96%), Gaps = 5/686 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGGAGGTGATGGTCAGGTGTCTCATTCGCTTGAGAAGCAGTTCGAGAGTTTCCGT 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGGCGGGAGGAGATGGTCAGGTGTCTCATTCGCTTGAGAAGCAGTTCGAGAGTTTCCGT 360
Query 61 GTTCAATTGGAAGAATCTGCAGCTTTGAGAGAGCAGATTCGTGCTGTGGTTATGGAGATT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTCAATTGGAAGAATCTGCAGCTTTGAGAGAGCAGATTCGTGCTGTGGTTATGGAGATT 420
Query 121 GAGTCCGCTACTAGGCTTATTCAAGCTAATCTTCTTCTCGTTCATCAATCGCGACCTATT 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 GAGTCTGCTACTAGGCTTATTCAAGCTAATCTTCTTCTCGTTCATCAATCGCGTCCTATT 480
Query 181 CCTGAGGTTATCGAGAAAGCCAAGGAAAAAATTGTTGATTTGAAGAAGTTTTATGGTCGG 240
|||||||||||||||||||| ||||||||||| |||||||||||| ||| ||||||||||
Sbjct 481 CCTGAGGTTATCGAGAAAGCTAAGGAAAAAATCGTTGATTTGAAGCAGTATTATGGTCGG 540
Query 241 CTTGCTGAAATTCTTCAGGAGTGTCCTGGACAGTACTATAGGTACCATGGAGACTGGAGA 300
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 CTTGCTGAAATTCTTGAGGAGTGTCCTGGACAATACTATAGGTACCATGGAGACTGGAGA 600
Query 301 AGTGAAACACAGGCAGTGGTCTCCCAGCTTGCTTTTATGCACTGGCTTGAAACTGGAACT 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 AGTGAAACACAGGCAGTGGTCTCCCAGCTTGCTTTTATGCACTGGCTAGAAACTGGAACT 660
Query 361 CTTCTCGCGCATAAGGAAGCTGAAGAAAAACTTGGGTTGAAGAGTTTGGAGTTTGGATTG 420
||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 CTTCTCGTGCATACCGAAGCTGAAGAAAAACTTGGGTTGAACAGTTTGGAGTTTGGATTG 720
Query 421 GAGACAGAAGATTATCTCACTGGAATTTGTTTCATGTCAAACGATTTGC--C-TAGGTAC 477
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 721 GAGACAGAAGATTATCTCACTGGAATTTGTTTCATGTCAAACGATTTGCAGCCTAGGTAC 780
Query 478 GTGGTAAATCGAGTGACAGCAGGAGACTATGACTGCCCAAGAAAGGTGATGAATTTCTTG 537
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 781 GTGGTTAATCGAGTGACAGCAGGAGACTATGACTGCCCAAGAAAGGTGATGAATTTCCTG 840
Query 538 ACAGATCTTCATGCAGCCTTTCGCATGCTCAATCTCAGGAACGATTTCCTGCGCAAGAAA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ACAGATCTTCATGCAGCCTTTCGCATGCTCAATCTCAGGAACGATTTCCTGCGCAAGAAA 900
Query 598 TTCGACAGTATGAAATATGACCTAAGAAGAGTCGAAGAAGTTTACTACGATGTTAAGATC 657
|||||||||||||| || |||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 901 TTCGACAGTATGAAGTACGACCTAAGAAGAGTGGAAGAAGTTTACTATGATGTCAAGATC 960
Query 658 AGAGGTTTGATTTCCG-CTGGAGATC 682
||||||||||||||| | |||||||
Sbjct 961 CGAGGTTTGATTTCCGGC-GGAGATC 985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34159219960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5