BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901573
Length=1299
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37070.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1297 0.0
AT3G53320.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 117 3e-25
> AT2G37070.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G53320.1);
Has 1323 Blast hits to 775 proteins in 176 species: Archae
- 0; Bacteria - 113; Metazoa - 351; Fungi - 175; Plants - 115;
Viruses - 13; Other Eukaryotes - 556 (source: NCBI BLink).
| chr2:15578415-15581308 FORWARD LENGTH=1776
Length=1776
Score = 1297 bits (702), Expect = 0.0
Identities = 874/954 (92%), Gaps = 23/954 (2%)
Strand=Plus/Plus
Query 1 ATGATGGGGAGGAAAAGTTTACCAACGGTTCAAGAGGATTTGCTTAGATCAACAGAGTCT 60
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 331 ATGATGGGGAGGAAAAGTTTACCAGCGGTTCAAGAGGATTTGCATAGATCAACAGAGTCT 390
Query 61 ATATCTACATTGAAAAGTGACTGCACTGTGGAGACTGGTCAGGAATTTGTTATGTTTGAT 120
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 391 ATGTCTACATTGAAAAGTGACTGCACTGTGGAGACTGGTCAGGAATTTTTTATGTGTGAT 450
Query 121 GCTGCAACACCTGACAAGAGTAAGGACTTGGGAGCAACAGAGGCAGTACCTAGTCCAACT 180
|||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||
Sbjct 451 GCTGCAACACCTGACAAGCGTAAGGACTTGGGATCAACAGAGGCAGTACCTAGCCCAACT 510
Query 181 ACAAGTACACTAGACGACCCTGGCTCTGAGGAAAATATGAAACCCAATCCTATTCGTAAA 240
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 511 ACAAGTACACTAGACGACCCTAGCTCTGAGGAAAAGATGAAACCCAATCCTATTCGTAAA 570
Query 241 AGGCCAAGTATTAGGGCACAAGGATTAGGGATGTCGACAAAGCAGCCCGTCGCTTCAAAA 300
|||||| ||||||| |||||||||||| || | |||||||||| || ||||||||| ||
Sbjct 571 AGGCCAGGTATTAGATCACAAGGATTAGCGAAGGCGACAAAGCATCCTGTCGCTTCAGAA 630
Query 301 GAACAC-A-ACA--CA--T-----CCAT----T----TC--CAGGCCATCCAGTAGACTC 339
|||||| | ||| || | |||| | || ||||||||||||| |||||
Sbjct 631 GAACACAATACATCCATTTCCAGGCCATCCACTGGACTCAACAGGCCATCCAGTGGACTC 690
Query 340 GGCAAAACTATAAGAGCTTTGGTAGATACTAACAAAGCCATACAAGAAACTAATCCTAAT 399
||||||| | |||||||| |||||||||||||||||||| ||||||||| ||||||||
Sbjct 691 AGCAAAACAAAAAGAGCTTCGGTAGATACTAACAAAGCCAAACAAGAAACGAATCCTAAA 750
Query 400 TTATCTGGAGGTAAAGAGCCTTTGGCTTCCAGAGTTCCAATTTCAAGAAGAACTCGACCT 459
| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 751 TCATCTGGGGGTAAAGAGCCTTTGGCTTCCAGAGTTCCAATTTCAAGAAGACCTCGACCC 810
Query 460 ATTGTATCAACACCTGTAGTGCCTTTTAAATCTGCTTTACGTTCTTCAGTCGCCTCCAAG 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 ATTGTATCAACACCTGTAGTGCCTTTTAAATCTGCTTTACGTTCTTCAGTCGCCTCCAAG 870
Query 520 AATGAATTAACATCTTCTTGCTCTTCTATTGAGAGCTGTCTCAGTGTTTCGTCAAACGCT 579
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 871 AATGAATTAACATCTTCTTGCTCTTCCATTGAGAGCTGTCTCAGTGTTTCGTCAACCGCT 930
Query 580 TCTCACAAGCCTTCTTTAGATTCAGTAAAGCGGAAGAAAGATCAGAGTTTAAGAATAGCT 639
||| ||||||||||| || |||||||||||| ||||||||||||||||||||||||||||
Sbjct 931 TCTAACAAGCCTTCTATACATTCAGTAAAGCAGAAGAAAGATCAGAGTTTAAGAATAGCT 990
Query 640 TCCCATTCTTTGGCAAATAGACCAACATCCAGCGCTGGATCTAGAAATATAAACCAGCCT 699
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
Sbjct 991 TCCCATTCTTTGGCAAATAGACCAAAATCCAGCGCTGGATCTAGAAATATAGACCAGCTT 1050
Query 700 AAAGTTCCACCCCTCTCAGCCGGTAGGAAATACAAGTTCAATGTATCACGTCTTAGTTCT 759
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1051 AAAGTTCCACCCGTCTCAGCCGGTAGGACATACAAGTTCAATGTATCACGTCTTAGTTCT 1110
Query 760 AGCGTTGACTGGTCATCAGGA-TCACCGCGGGCTTCTACACCTAATAAAATGGCTAAAAG 818
|| |||||||||||||| ||| |||||||| |||| ||| |||||||||||||||||| |
Sbjct 1111 AGTGTTGACTGGTCATC-GGAATCACCGCGAGCTTTTACTCCTAATAAAATGGCTAAAGG 1169
Query 819 TACCAAGAAAAGTGTCCATGGTGATAGCGGTCCTACAACTGATGATACAAAACAAACTTT 878
|| ||||||||||||||||||||||| ||||||| |||||||| |||||| ||| |||||
Sbjct 1170 TAACAAGAAAAGTGTCCATGGTGATAACGGTCCTCCAACTGATTATACAACACAGACTTT 1229
Query 879 GAGACCTTTGAACAATTCTAAAGATTTATCTGTTGTCCAAGATGACCCTAAGCC 932
|| |||| ||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1230 GAAACCTCTGAACAATTCTAAAGATGTATCTGTTGTCCAAGATGACCCAAAGCC 1283
Score = 435 bits (235), Expect = 7e-121
Identities = 294/321 (92%), Gaps = 10/321 (3%)
Strand=Plus/Plus
Query 981 GCCTTCTGCTACCATGATGAAACCAACGGGACTCCGTGTGCCATCACCAAAAATCGGCTA 1040
|||||||||| |||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 1281 GCCTTCTGCTTCCATGATGAAACCAACGGGACTCCGTGTGCCATCGCCAAAAGTTGGCTA 1340
Query 1041 CTTTGACGGAGCGAGGAGCAGTGTTGCACGAACACCCACGGGATCGTGTACTGGTCCGGT 1100
|||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1341 CTTTGACGGAGCGAGGGGCAGCGTTGCACGAACACCCACGGGATCCTGTACTGGTCCGGT 1400
Query 1101 AAGTGGCTTGGCAAAACATGGAGCCTT-TAGTCCC-ATTGAATTAACTGCAAGTAGAACC 1158
|||||||||| |||||||||||| ||| ||||||| | |||||| ||| |||||||
Sbjct 1401 AAGTGGCTTGTCAAAACATGGAG-CTTGTAGTCCCGA-TGAATTTACTCCAAGTAG---- 1454
Query 1159 AAGTCTGCAAAGTCCCAACCCTCAATGTCTAAAGCAAAGGTCCGTCCTGTTTCAAGGAGT 1218
|| ||||||||||||||||| |||||||||||||| ||| ||||| ||||||||||||
Sbjct 1455 AA--CTGCAAAGTCCCAACCCACAATGTCTAAAGCAGCGGTTCGTCCAGTTTCAAGGAGT 1512
Query 1219 TCAAGGCTGATTGTCTCGGCTTCACCAAAGCTTACCAACAAAAGGTATTCAAAAGTCAGT 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 TCAAGGCTGATTGTCTCGGCTTCACCAAAGCTTACCAACAAAAGGTATTCAAAAGTCAGT 1572
Query 1279 GCAGAGGAACAACTCGAATAA 1299
|||||||||||||| | ||||
Sbjct 1573 GCAGAGGAACAACTTGGATAA 1593
> AT3G53320.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G37070.1);
Has 11044 Blast hits to 5993 proteins in 551 species: Archae
- 8; Bacteria - 1486; Metazoa - 4078; Fungi - 1814; Plants
- 348; Viruses - 112; Other Eukaryotes - 3198 (source: NCBI
BLink). | chr3:19769176-19772369 REVERSE LENGTH=1974
Length=1974
Score = 117 bits (63), Expect = 3e-25
Identities = 221/294 (75%), Gaps = 24/294 (8%)
Strand=Plus/Plus
Query 765 TGACTGGTCATCAGGA-TCACCGCGGGCTTCT-ACACCTAATAAAATGGCTAAAAGT-AC 821
||||| |||||| || ||| | || |||||| | | ||| |||||||||||| || ||
Sbjct 1291 TGACTATTCATCA-GAGTCATCACGAGCTTCTGA-AACTAGTAAAATGGCTAATGGTAAC 1348
Query 822 CAAGAAAAGTGTC-CATGGTG-ATAGCGGTCCTACAACTGATGATACAAAACAAACTTTG 879
| |||||| ||| | | ||| | || | |||| ||| |||| ||||| ||||||| ||
Sbjct 1349 C-AGAAAACAGTCTC-TCGTGAAAAG-GTTCCTGCAAATGATAATACAGTACAAACTGTG 1405
Query 880 AGACCTTTGAACAATTCTAAAGATTTATCTGTTGTCCAAGATGACCCTAAGCCGGATAAA 939
| |||| | || || || |||||| |||||||||||||| ||| | | | |||
Sbjct 1406 AAACCTCTCAAGAACTCCAAAGATACATCTGTTGTCCAAGCTGA---T--G-C---TAAG 1456
Query 940 CAAGGCACAAAACGTGGTTCAGTTGTCAGTGGTGGCGAT-GTGCCTTCTGCTACCATGAT 998
||||||||||||| | ||||| | ||| ||||| | || ||||| ||| || |
Sbjct 1457 GAAGGCACAAAACGAGTTTCAGCTATCAACGGTGG-TTTGGTTCCTTCAGCTTCC--G-C 1512
Query 999 GAAACCAACGGGACTCCGTGTGCCATCACCAAAAATCGGCTACTTTGACGGAGC 1052
|||||| | || |||||||||||||||||||||||||||| |||||| |||||
Sbjct 1513 AAAACCATCAGGTCTCCGTGTGCCATCACCAAAAATCGGCTTCTTTGATGGAGC 1566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63905293785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5