BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901607
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37390.1 | Symbols: NAKR2 | Chloroplast-targeted copper chap... 1127 0.0
AT3G53530.2 | Symbols: NAKR3 | Chloroplast-targeted copper chap... 200 2e-50
> AT2G37390.1 | Symbols: NAKR2 | Chloroplast-targeted copper chaperone
protein | chr2:15694215-15695825 FORWARD LENGTH=1229
Length=1229
Score = 1127 bits (610), Expect = 0.0
Identities = 727/783 (93%), Gaps = 10/783 (1%)
Strand=Plus/Plus
Query 1 ATGAAGGGACGTATGTTTTGCGCTTCGCAAGCATCAACAGCCATATGTTCAAGCATGGAC 60
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 86 ATGAAGGGACGAATGTTTTGCGCTTCGCAAGCATCGACAGCCATATGTTCAAGCATGGAC 145
Query 61 CACGTTCACAAATCAACCACCACCGAAGAAGATGAACGAAGTAGCGGCCGAGCTATAGAC 120
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 146 CACGTTCACAAATCAACCACCACCGACGAAGATGAACGAAACAGCGGCCGAGCTATAGAC 205
Query 121 CGCCACAATCCGATCATTAAAGATGGCCGAAGATCATTCGCCGAGGACTTCATCAAACTA 180
|||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 206 CGCCACAACCCGATCATTAAAGATGGCCGAAGATCATTCGCTGACGACTTCATTAAACTA 265
Query 181 CCAGCTTCCGCCGAAGACGGAGAGATGAGTAACAAAAAACTAGAGATCTATAAAGGCAGG 240
||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 266 CCAACTTCCGCAGAAGACGGAGAGATGAGTAACAAAAAGCTAGAGATCTATAAAGGCAGG 325
Query 241 AGAAGCATTACTGGCCGGAGAAGCACGGGTGGTGGCGGGGGAGGCGGAGCAGCGGCGTTG 300
|||||||| |||||| ||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 326 AGAAGCATCACTGGCAGGAGAAGCACGGGCGGTGGCGGTGGAGGCGGAGCAGCGGCGTTG 385
Query 301 TTGAAGCTTATTACCAATGACATTGGCCTAGCGAGGAAGAGTTTCAGCTGTGTTGCTAGA 360
|||||||| || || |||||||||||| |||| ||||||||||||||||||||||| |||
Sbjct 386 TTGAAGCTGATCACTAATGACATTGGCTTAGCAAGGAAGAGTTTCAGCTGTGTTGCGAGA 445
Query 361 CCCGCTTGTGACTTAATCAAAACCCATGTGGGTTCTACAAGGTATCTTTTGGGATCGGAC 420
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 446 CCCGCATGTGACTTAATCAAAACCCCTGTGGGTTCTACAAGGTATCTTTTGGGATCGGAC 505
Query 421 CCGGATTCTATTTCTGGG-TCTCCGGGTCAGGTTCCGGCTATGACGGTAGAAGCTGAAGC 479
|||||||||||| | ||| ||| || ||||| |||||||| ||||||||||||||||||
Sbjct 506 CCGGATTCTATTAC-GGGTTCTGTGGATCAGGATCCGGCTAAGACGGTAGAAGCTGAAGC 564
Query 480 TCCTGCTGGTGAAGGCATAACGTTGAC-G-G-AGAAGA-ATACTTGTGTTGGTAGTTCGG 535
|||||||||||||| || ||||||||| | | |||||| | ||||||| | | | | | |
Sbjct 565 TCCTGCTGGTGAAGACAAAACGTTGACAGAGAAGAAGACA-ACTTGTGGT-G-A-TACAG 620
Query 536 ACCAGCAGGTCGTTGTTCTTAAAGTGTCTCTCCACTGCAGAGGCTGTGAAGGCAAAGTTA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 ACCAGCAGGTCGTTGTTCTTAAAGTGTCTCTCCACTGCAGAGGCTGTGAAGGCAAAGTTA 680
Query 596 GGAAACACTTGGCCAGAATGCAAGGTGTGACATCCTTCAACATAGATTTTGCTGCAAAGA 655
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 681 GGAAACACTTGGCCAGAATGCAAGGTGTAACATCTTTCAACATAGATTTTGCTGCAAAGA 740
Query 656 AGGTAACTGTGACTGGAGATATCACTCCCTTGGAAATATTGGAAAGTATCTCAAAGGTTA 715
| || |||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 741 AAGTGACTGTGACTGGAGATATCACTCCCTTGGAAATATTGGATAGCATTTCAAAGGTTA 800
Query 716 AAAATGCCCAATTTTGGACAACTCCAACATTCCCAAAGCCAAACGTGGAAACCCAAAATC 775
||||||||||||||||||||| ||||||| |||||||||| ||||||||||| |||||||
Sbjct 801 AAAATGCCCAATTTTGGACAAATCCAACAATCCCAAAGCCGAACGTGGAAACACAAAATC 860
Query 776 CCT 778
|||
Sbjct 861 CCT 863
> AT3G53530.2 | Symbols: NAKR3 | Chloroplast-targeted copper chaperone
protein | chr3:19845097-19846820 FORWARD LENGTH=1086
Length=1086
Score = 200 bits (108), Expect = 2e-50
Identities = 207/251 (82%), Gaps = 21/251 (8%)
Strand=Plus/Plus
Query 541 CAGGTCGTTGTTCTTAAAGTGTCTCT---C---CACTGCAGAGGCTGTGAAGGCAAAGTT 594
||||| |||||||||| ||||||||| | ||||||||||||||| ||||||||||
Sbjct 604 CAGGTAGTTGTTCTTAGAGTGTCTCTCCACTGTCACTGCAGAGGCTGTCAAGGCAAAGTG 663
Query 595 AGGAAACACT-TGGCCAGAATGC-A--AGGTGTGACATCCTTCAACATAGATTTTGC-TG 649
| |||||| | | ||| ||||| | |||||||||||||||||||||||||||||| |
Sbjct 664 AAGAAACA-TCTATCCAAAATGCAAGTAGGTGTGACATCCTTCAACATAGATTTTGCAT- 721
Query 650 CAAAGAAGGTAACTGTGACTGGAGATATCACTCCCTTGGAAATATTGGAAAGTATCTCAA 709
||||||||||||||||||||||||| |||||||| |||||| |||||| | ||||||
Sbjct 722 CAAAGAAGGTAACTGTGACTGGAGACATCACTCCTTTGGAAGTATTGGGTTGCCTCTCAA 781
Query 710 AGGTTAAAAATGCCCAATTTTGGACA--AC-TCCAACAT---TCCCAAAGCCAAA-CGTG 762
|||| |||||||||||||| |||||| || |||| ||| |||||| | |||| | |
Sbjct 782 AGGTCAAAAATGCCCAATTCTGGACACCACCTCCACCATCAATCCCAAGGGCAAATCC-G 840
Query 763 GAAACCCAAAA 773
|||||| ||||
Sbjct 841 GAAACCTAAAA 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37926780985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5