BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901608
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43445.1 | Symbols: | F-box and associated interaction doma... 189 3e-47
AT2G43270.1 | Symbols: | F-box and associated interaction doma... 134 1e-30
> AT2G43445.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:18041485-18043086 FORWARD LENGTH=1335
Length=1335
Score = 189 bits (102), Expect = 3e-47
Identities = 253/322 (79%), Gaps = 26/322 (8%)
Strand=Plus/Plus
Query 1 ATGGTGGAAG-AAGAAAAAAGCTCTAATTCGATCTACATAGTTCCCGAATTA-TTGGAAG 58
|||| ||||| |||| |||| | |||| || |||||||||||| |||| || || ||||
Sbjct 27 ATGGAGGAAGAAAGAGAAAA-CACTAACTCTATCTACATAGTTTCCGAGCTACTT-GAAG 84
Query 59 AAATTTTCCTTCGATTGCCATTGAAACCAATTCTCAAATTCAAAACCGTCTCAAAACAAT 118
||||||||||| ||||||| |||||| |||| ||||||||||||||||||||||||||||
Sbjct 85 AAATTTTCCTTGGATTGCCTTTGAAATCAATCCTCAAATTCAAAACCGTCTCAAAACAAT 144
Query 119 GGAGATTAGTCCTGGAATCGAAAATGTTCGTGGAAAAGCGTATGAA-TGCTTCAAA-GAG 176
|||||| | ||||||||||||| |||||||||| | ||||| ||| | ||||||| ||
Sbjct 145 GGAGATCAATCCTGGAATCGAACTTGTTCGTGGAGAGGCGTA-GAACT-CTTCAAAAGAA 202
Query 177 TG----GAAAAATAATAGCTGCTTACAACTGCGACTGCGGCGAC-CGGCCGAGAATCATC 231
||||| | | |||||||| |||||||||| | || || |||||| | ||| ||
Sbjct 203 CCACCCGAAAA-TCCTGGCTGCTTATAACTGCGACTACTGC-ACGCGGCCGGGTATCCTC 260
Query 232 CACGAGGCC-CGGTT--A-GGGGACCAAGTGTTTGTCTATCTACACTGCTTCAACGC-AC 286
| | | | | | ||| | |||||| ||| | | || ||||| || | | | |||| ||
Sbjct 261 C-CTAAGTCTCAGTTCGAAGGGGACGAAGAGATCGTTTATCTTCA-TAC--CGACGCCAC 316
Query 287 G-A-CCCTCGATGATTTGCGAC 306
| | |||||||||| |||||||
Sbjct 317 GCAACCCTCGATGACTTGCGAC 338
> AT2G43270.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:17988207-17989491 REVERSE LENGTH=1164
Length=1164
Score = 134 bits (72), Expect = 1e-30
Identities = 117/138 (85%), Gaps = 6/138 (4%)
Strand=Plus/Plus
Query 30 GATCTACATAGTTCCCGAAT-TA-TTGGAAGAAATTTTCCTTCGATTGCCATTGAAACCA 87
||| ||| ||||||||| || || || ||||||||||||||| ||||||| || ||| ||
Sbjct 3 GATTTACGTAGTTCCCG-ATCTACTT-GAAGAAATTTTCCTTGGATTGCCTTTAAAATCA 60
Query 88 ATTCTCAAATTCAAAACCGTCTCAAAACAATGGAGATTAGTCCTGGAATCGAAAATGTT- 146
|| |||| ||||||||||||||||||||||||||||| | ||||||||||||| | |||
Sbjct 61 ATCCTCAGATTCAAAACCGTCTCAAAACAATGGAGATCAATCCTGGAATCGAAGA-GTTT 119
Query 147 CGTGGAAAAGCGTATGAA 164
|| ||| | |||| ||||
Sbjct 120 CGCGGAGAGGCGTTTGAA 137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30391658935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5