BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901618
Length=567
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37450.2 | Symbols: | nodulin MtN21 /EamA-like transporter ... 726 0.0
> AT2G37450.2 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr2:15722568-15724937 REVERSE LENGTH=1357
Length=1357
Score = 726 bits (393), Expect = 0.0
Identities = 515/572 (90%), Gaps = 15/572 (3%)
Strand=Plus/Plus
Query 10 TTTCAGTCTCTTTCCTCTA-ATTTTGGTAGAAACCCTCTTAGTGATCTTGCAGAGATGGC 68
|||||| |||||||||||| |||| || |||| ||||| | ||||||||||||||||||
Sbjct 32 TTTCAGCCTCTTTCCTCTATTTTTTTGTTGAAATCCTCTAAATGATCTTGCAGAGATGGC 91
Query 69 ATGTATGAAGAAGGCACTACCATTCCTTTTAATGGTATTGTTGCAGATAGGGCTA-GCAG 127
||||||||||||||||||||||||| ||||||||||||||||||| |||||| || ||||
Sbjct 92 ATGTATGAAGAAGGCACTACCATTCATTTTAATGGTATTGTTGCAAATAGGG-TATGCAG 150
Query 128 GAATGGACATTCTCACAAAGGATGCCCTAAACAAAGGCATGAGCATTTACGTTCTTTCCG 187
||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 151 GAATGGATATTCTTACAAAGGATGTCCTAAACAAAGGCATGAGCATTTACGTTCTTTCCG 210
Query 188 TCTACCGTCACGGCGTT-ATATC-AACTTCT--CT-CAAAAAAC--ATAATT---C-A-C 235
||||||||||||| ||| | | || | || | | || || | | |
Sbjct 211 TCTACCGTCACGGAGTTGCCACCGTTGTTATGGCTCCGTTCGCCTTCTACTTCGACAATC 270
Query 236 CAGTGATCGCTCAAAACTTATTCAATCTGGGGATGAAATACACGACAGCTACATTTGCAA 295
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 271 CAGTGATTGCTCAAAACTTATTCAATCTCGGGATGAAATACACGACAGCTACATTTGCAA 330
Query 296 TTGCCTTGTACAACACTTTACCTGCGGTCACGTTCATCCTCGCCTTAATATTCAGGCTCG 355
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 331 TTGCCTTGTACAACACTTTACCTGCAGTCACGTTCATCCTCGCCTTAATATTCAGGCTCG 390
Query 356 AAAGTGTGAAGCTTCAAAGTATCAGGAGTGCAGCTAAGGTGGTTGGAACAGTGACTACAG 415
|||| |||||| ||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 391 AAAGCGTGAAGTTTCAAAGTATCAGGAGTGCCGCTAAGGTGGTTGGAACAGTAACTACAG 450
Query 416 TTGGAGGAATCATGGTCATGACACTTGTAAAAGGTCCAGCTCTTGACCTCTTCTGGACTA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 TTGGAGGAATCATGGTCATGACACTTGTAAAAGGTCCAGCTCTTGACCTCTTCTGGACTA 510
Query 476 ACGGACCCTCTGCACATAACACAGTTGGGACCGATATTCATAGCTCCATCAAAGGCGCAG 535
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 511 AAGGACCCTCTGCACAGAACACAGTTGGGACCGATATTCATAGCTCCATCAAAGGTGCAG 570
Query 536 TATTGGTCACCATTGGTTGTTTCAGCTATGCA 567
| || ||||| |||||||| ||||||||||||
Sbjct 571 TTTTAGTCACAATTGGTTGCTTCAGCTATGCA 602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27226907674
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5