BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg901622

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G23500.1 | Symbols:  | Pectin lyase-like superfamily protein...   726    0.0  


> AT4G23500.1 | Symbols:  | Pectin lyase-like superfamily protein 
| chr4:12264590-12267196 FORWARD LENGTH=1660
Length=1660

 Score =  726 bits (393),  Expect = 0.0
 Identities = 441/464 (95%), Gaps = 4/464 (1%)
 Strand=Plus/Plus

Query  1     ATTAAAACAGCTATTGGACGAGGAGGATACGTGAAAGATGTATATGTAAGAGGAATGACA  60
             |||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct  1077  ATTAAAACAGCTATCGGACGAGGAGGTTACGTGAAGGATGTATACGTAAGAGGAATGACA  1136

Query  61    ATGAAT-ACGATGAAATATGTGTTTTGGATGACCGGAAGTTACGGTTCTCATCCTGACGA  119
             ||| || || |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct  1137  ATG-ATGACAATGAAATATGTGTTTTGGATGACCGGAAGTTACGGTTCGCATCCGGACGA  1195

Query  120   GCATTATGATCCGAAAGCGTTACCGGTGATTCAGAACATTAATTATCAAGACATGGTCGC  179
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1196  TCATTATGATCCGAAAGCGTTACCGGTGATTCAGAACATTAATTATCAAGACATGGTCGC  1255

Query  180   CGAGAATGTGACGATGCCTGCTCAGTTGGCTGGAATATCGGGAGATCAGTTTACTGGAAT  239
             |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1256  CGAGAACGTGACGATGCCTGCTCAGTTAGCTGGAATATCGGGAGATCAGTTTACTGGAAT  1315

Query  240   CTGTATCTCTAACGTGACGATCACTCTTTCGAAGAAACCTAAGAAAGTGCTTTGGAATTG  299
              ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct  1316  TTGTATCTCTAACGTGACTATCACTCTATCGAAGAAACCTAAGAAAGTGCTTTGGAATTG  1375

Query  300   TACGGATGTTTCGGGTTATACAAGTGGTGTGACTCCGCAGCCGTGTCAGCTT-TTGCCGG  358
             ||| ||||||||||||||||| ||||||||||||||||||||||||||| || || ||||
Sbjct  1376  TACTGATGTTTCGGGTTATACTAGTGGTGTGACTCCGCAGCCGTGTCAG-TTGTTACCGG  1434

Query  359   AGAAGCAGCCGGGGGCAATTGTGCCGTGTAATTTCCCGGAAGATCCGATTCCTATTGATG  418
             |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1435  AGAAGCAGCCGGGGACGGTTGTGCCGTGTAATTTCCCGGAAGATCCGATTCCTATTGATG  1494

Query  419   AAGTGAAGCTTCAACGTTGCTACTCCAGAAGAAGGAATATGTGA  462
             ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1495  AAGTGAAGCTTCAACGTTGCTACTCCAGAAGAAGGAATATGTGA  1538



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5