BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg901651

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23200.1 | Symbols:  | Uncharacterised protein family (UPF04...   329    9e-90


> AT3G23200.1 | Symbols:  | Uncharacterised protein family (UPF0497) 
| chr3:8281363-8282778 FORWARD LENGTH=930
Length=930

 Score =  329 bits (178),  Expect = 9e-90
 Identities = 297/350 (85%), Gaps = 25/350 (7%)
 Strand=Plus/Plus

Query  1    ATGGTTACTTCTAGTGGATTCTTCAGCTTCACTGCTTTCTGCTATCTAATAGCAGCAATG  60
            |||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct  387  ATGGTTACTTCTGGTGGCTTCTTTAGCTTCACTGCTTTCTGCTATCTAATAGCAGCAATG  446

Query  61   GGTTTGCAAGTCATATGGAGTTTCGGTCTTGCTATACTAGACACATTCGCCTTAGTGAGA  120
            || |||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct  447  GGATTGCAAGTCATATGGAGTTTTGGTCTTGCAATACTAGACACATTCGCATTAGTGAGA  506

Query  121  AAGAAAACGCTTCTTAGTCCGGTTTTAGTCAGCCTATTTGTAGTTGGAGATTGGGTAAGA  180
            |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
Sbjct  507  AAGAAAACGCTTCTTAGTCCAGTTTTAGTCAGCCTCTTTGTAGTTGGAGATTGGGTAACA  566

Query  181  GTAGACCCTCTCTCT-GTCTGTAACATCGACATTGTCATTAGCAGGAGCATCATCAAAAT  239
             | |||  | || || | | | | ||||| | ||  |    || || | |  || ||   
Sbjct  567  -TCGACATTGTCACTAG-CGGGAGCATCGTC-TTC-C----GC-GG-G-A--AT-AACG-  611

Query  240  GCTAATCATTTTGTATTTTGGCGATTTAGGAAGCTGCAGTTTTGAAGCAGAGTGTTGGAA  299
            | |  |  || |  | ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct  612  G-T--T--TTAT--ACTTTGGAGATTTAGGAAGCTGCAGTTTCGAAGCAGAGTGTTGGAA  664

Query  300  ATACCAACTCTCTGTAGCTTTAGCTTTCCTTTGTTGGATCAC-AGTCGCC  348
             ||||||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct  665  GTACCAACTCTCTGTAGCTTTAGCCTTCCTTTGTTGGATCACTA-TCGCC  713



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17040766911


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5