BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg901652

Length=639
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G36370.1 | Symbols:  | ubiquitin-protein ligases | chr2:1524...   226    2e-58


> AT2G36370.1 | Symbols:  | ubiquitin-protein ligases | chr2:15247793-15252967 
FORWARD LENGTH=2965
Length=2965

 Score =  226 bits (122),  Expect = 2e-58
 Identities = 146/157 (93%), Gaps = 4/157 (3%)
 Strand=Plus/Plus

Query  197  GGCTTA-TCGAGGAATCCTCGTATTTCCATGGCCTTCTAAGTGGAAGCTTCAGTGAATCA  255
            |||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  154  GGCTTATTC-AGGAATCCTCGTATTTCCATGGCCTTCTAAGCGGAAGCTTCAGTGAATCA  212

Query  256  GGCCTTGATCATATCTCTGTTGAATGGAATCC-AGAGACTTTCTTGAATCTTCTCATGTG  314
            ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct  213  GGCCTTGATCATATCTCTGTTGAATGGAA-CCTAGAGAGTTTCTTGAATCTTCTCATGTG  271

Query  315  TTTGTATGGTTACTCCATTGATATTACATCCAGTAGT  351
            |||||||||||||   || || |||||||||||||||
Sbjct  272  TTTGTATGGTTACGATATAGAGATTACATCCAGTAGT  308


 Score =  134 bits (72),  Expect = 1e-30
 Identities = 101/114 (89%), Gaps = 5/114 (4%)
 Strand=Plus/Plus

Query  44   ATCAAC--GA-GAGGCATCTTCTTCGAGTCAAGAGATTTCGATCTCAGCTTCTGAAATCG  100
            ||||||  || || ||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct  31   ATCAACAAGACGACGCATCTTCTTCGATTCAAGAGATTTCGATCTCAGCTTCTGAAATTG  90

Query  101  -TATCCTGGGGTTTGTCAAAAATACTCTCTTACGGAAGAGTAAAAGTTCGAGCT  153
             | ||||||| | ||||| | ||||||||||||||||| |||||||||||||||
Sbjct  91   CT-TCCTGGGATATGTCAGAGATACTCTCTTACGGAAGTGTAAAAGTTCGAGCT  143



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30843766258


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5