BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg901661

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G40780.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pr...   828    0.0  


> AT2G40780.1 | Symbols:  | Nucleic acid-binding, OB-fold-like 
protein | chr2:17021505-17022916 FORWARD LENGTH=1054
Length=1054

 Score =  828 bits (448),  Expect = 0.0
 Identities = 498/521 (96%), Gaps = 7/521 (1%)
 Strand=Plus/Plus

Query  1    ATGAACAGAGGAAGAAGGAATCTGAAACAAGCGGCGTCAGAGCAGGATTTCACGCTTGAG  60
            |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct  371  ATGAACAGAGGAAGAAGGAATCTGAAACAAGCGGCGTCGGACCAGGATTTCACGCTTGAG  430

Query  61   GAATGTCAGAGCATTGCCCAAGTCGTCTCTCTCAGAGGTTCCAATCAAATTGAGATAATG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  431  GAATGTCAGAGCATTGCCCAAGTCGTCTCTCTCAGAGGTTCCAATCAAATTGAGATAATG  490

Query  121  GATGCAAAAGGAGAGAACTCATTAGCTTTGTTTCCAGCTAAGTTTCGTGAGAGCATGTGG  180
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  491  GATGCAAAAGGAGAGAACTCATTAGCTTTGTTTCCAGCCAAGTTTCGTGAGAGCATGTGG  550

Query  181  ATCAGACGAGGAAGCTTTGTAGTGATTGACCATACAGGAAAGGAAAAGGCTCAAGAGTCT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  551  ATCAGACGAGGAAGCTTTGTAGTGATTGACCATACAGGAAAGGAAAAGGCTCAAGAGTCT  610

Query  241  GGTAGTAAAGTTACATCTATTGTCTGTAAAGTTCTATTCTTTGAGCAAGTCCGTCTCCTT  300
            ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct  611  GGTAGCAAAGTTACATCTATTGTATGTAAAGTTCTATTCTTTGAGCAAGTCCGTCTTCTT  670

Query  301  CAAAAGTCCCCGGAATGGCCGGAAATCTTCAAAGATACTAAACCGATTCCAGCTGATAAA  360
            |||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| |||
Sbjct  671  CAAAAGTCTCCGGAATGGCCAGAAATCTTCAAAGATACTAGACCGATTCCAGCTGAGAAA  730

Query  361  AGCTCACCCATTGAACAGCATGAAGATGACGGTGAAATTGATTCGAGtgatgatgatgat  420
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  731  AGCTCACCCATTGAACAGCATGAAGATGACGGTGAAGTTGATTCGAGTGATGATGATGAT  790

Query  421  gatgGCATGCCCCCATTGGAAGCAAACACAAACAGATTGAGACCGTTTGGTGTGCAA-TG  479
            | |   ||||| |||||| ||||||||||||||||||||||||||||||| ||| || ||
Sbjct  791  GGT---ATGCCTCCATTGCAAGCAAACACAAACAGATTGAGACCGTTTGGGGTG-AAGTG  846

Query  480  T-ACTGCAGAAACAGATTCAGGGTCAGATTCCGATTCATAG  519
            | | ||||||||| |||||||||||||||||||||||||||
Sbjct  847  TGA-TGCAGAAACTGATTCAGGGTCAGATTCCGATTCATAG  886



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24815668618


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5