BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901662
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40810.1 | Symbols: ATATG18C, ATG18C | homolog of yeast auto... 1219 0.0
AT3G56440.1 | Symbols: ATATG18D, ATG18D | homolog of yeast auto... 665 0.0
> AT2G40810.1 | Symbols: ATATG18C, ATG18C | homolog of yeast autophagy
18C | chr2:17032464-17034600 FORWARD LENGTH=1576
Length=1576
Score = 1219 bits (660), Expect = 0.0
Identities = 735/772 (95%), Gaps = 2/772 (0%)
Strand=Plus/Plus
Query 400 ATTTATGTTTACAATTTTATGGACCTTAGACTTCTTCATCAGATTGAAACCCAAGCTAAT 459
||||||||||| || |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 547 ATTTATGTTTATAACTTTATGGATCTTAGACTTCTTCATCAGATTGAAACTCAAGCTAAT 606
Query 460 CCTAGAGGATTATGTTGCCTTTCTCATCATTCTAATACGTCTGTGCTCGCTTGCCCCGGT 519
||||||||||| ||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 607 CCTAGAGGATTGTGTTGCCTTTCTCATCATTCTAATACGTCTGTGTTGGCTTGCCCTGGT 666
Query 520 CTTC-ATCGAGGAGAGATTCGAGTTGAACATTTCGGGCTTAACATGGTACAAATCATAAA 578
| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 667 C-TCAATCGAGGAGAGATTCGTGTTGAACATTTCGGGCTTAACATGGTACAAATCATAAA 725
Query 579 TGCTCATGATTCTAGTATTGCGTGTATGACTTTGACATTGGATGGTTTGTTGCTCGCAAC 638
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 726 TGCTCATGATTCAAGTATTGCGTGTATGACCTTGACATTGGATGGTTTGTTGCTTGCAAC 785
Query 639 TGCTAGTACAAAGGGAACTCTGATTAGAATCTTCAACACTATGGACGGAACTCGTTTGCA 698
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 786 TGCTAGTACAAAGGGAACTCTGATTAGAATCTTCAACACAATGGATGGAACTCGTTTGCA 845
Query 699 AGAGGTACGAAGAGGAGTGGACAGAGCAGATATTTATAGCATTGCACTTTCACCAAACGT 758
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 846 AGAGGTACGAAGAGGAGTCGACAGAGCAGATATATATAGCATTGCACTTTCACCAAATGT 905
Query 759 GCAGTGGCTGGCTGTATCAAGCGACAAGGGGACTGTTCACATTTTCTCTCTTAGAGTTAG 818
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 906 GCAGTGGCTGGCGGTATCAAGTGACAAGGGGACTGTTCACATTTTCTCTCTTAGAGTTAG 965
Query 819 GCTAGTTGGGGAGGATTCTTATTCCACTGAAAATGCAGCTCTCCTGACACAACAAACTTA 878
| | ||||||||||||||||||||||||||||||| |||||| |||||||||||| |||
Sbjct 966 GGTTGTTGGGGAGGATTCTTATTCCACTGAAAATGGAGCTCTGTTGACACAACAAAATTA 1025
Query 879 TTCTACTTCTCTGCAAGGCATTGTTTCTCCAACCACTGGTACCAATCCCGGTTCGTCATT 938
||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1026 TTCTAATTCTCTGCAAGGCCTTGTTTCTCCAACCATTGGTACCAATCCCGGTTCGTCATT 1085
Query 939 GTCGTTTATGAGAGGTGTTCTACCAAAGTATTTCAGCTCGGAATGGTCATATGCACAGTT 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 GTCGTTTATGAGAGGTGTTCTACCAAAGTATTTCAGCTCGGAATGGTCATATGCACAGTT 1145
Query 999 TCATGTATCAGAAGTCACACAATTCTTCGCAGCATTTGGCAGTAACAACACGGTTGCTAT 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 TCATGTATCAGAAGTCACACAATTCTTCGCAGCATTTGGCAGTAACAACACGGTTGCTAT 1205
Query 1059 TATCGGCATGGATGGAAGTTTTTACAGATGCAGCTTTGATCCCGTGAACGGAGGAGAGAT 1118
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1206 TATCGGCATGGATGGAAGTTTCTACCGATGCAGCTTTGATCCCGTGAACGGAGGAGAGAT 1265
Query 1119 GGGGCAACTGGAATATTTCCACTTTCTGAAGACGGACAACCGCCGGAGATAA 1170
|||||||||||||||| |||||||| |||||| ||||||||||| | |||||
Sbjct 1266 GGGGCAACTGGAATATATCCACTTTATGAAGATGGACAACCGCCCGTGATAA 1317
Score = 407 bits (220), Expect = 1e-112
Identities = 281/311 (90%), Gaps = 2/311 (1%)
Strand=Plus/Plus
Query 89 CAGAATCAGAATCTATTAACAACGACGAAGCAGAGTTGGTCACTGTGTGTAGGAATCAAG 148
|||||||||||||||| || || || ||||||||||| || |||||||| ||||||| |
Sbjct 191 CAGAATCAGAATCTATGAAAAAAGAGGAAGCAGAGTTAGTTTCTGTGTGTTGGAATCAGG 250
Query 149 ATTCCAGTTGCTTCGCAGCTGGAACGAGTCATGGCTATCGTATATATAACTGTCAACCTT 208
|||| ||||| || |||||||||||||||||||| | |||||||||||||||| ||||||
Sbjct 251 ATTCAAGTTGTTTTGCAGCTGGAACGAGTCATGGTTTTCGTATATATAACTGTGAACCTT 310
Query 209 TCAAGGAAACTTTCAGGCGTGAGCTAAAGAACGGTGGTTTCAAAATTGTAGAGATGCTTT 268
|||| |||||||||||||||||||||||| |||||||||| ||||| |||||||||||||
Sbjct 311 TCAAAGAAACTTTCAGGCGTGAGCTAAAGGACGGTGGTTTTAAAATCGTAGAGATGCTTT 370
Query 269 GCCGAATCAATATATTGGCACTTGTAGGTGGTGGACCTAACTCTCAGTACCCTTCAAACA 328
||| | ||||||| |||||||||| ||||||||||||||||||||||| ||||||| ||
Sbjct 371 TCCGTAGCAATATACTGGCACTTGTTGGTGGTGGACCTAACTCTCAGTATCCTTCAAGCA 430
Query 329 AAGTACTAATTTGGGATGATCATCAGACCCGTTGCATTAGTGAATT-GCAATTAAGGTCT 387
||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| |||||
Sbjct 431 AAGTACTAATTTGGGATGATCATCAGAGCCGTTGCATTAGTGAATTTGCATTTA-GGTCT 489
Query 388 GAGATTCGTGC 398
|||||||||||
Sbjct 490 GAGATTCGTGC 500
Score = 71.3 bits (38), Expect = 2e-11
Identities = 42/44 (95%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 1 ATGAGCTCAACTGTTTCAAATCCCCAAGGAATCCTGCAACAAGG 44
||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 133 ATGAGTTCAACTGTTTCAAATCCCCAAGGAATCCTGCAACCAGG 176
> AT3G56440.1 | Symbols: ATATG18D, ATG18D | homolog of yeast autophagy
18 (ATG18) D | chr3:20926001-20928988 FORWARD LENGTH=1656
Length=1656
Score = 665 bits (360), Expect = 0.0
Identities = 631/757 (83%), Gaps = 38/757 (5%)
Strand=Plus/Plus
Query 403 TATGTTTACAATTTTATGGACCTTAGACTTCTTCATCAGATTGAAACCCA-AGCTAATCC 461
||||| |||||||||||||| || |||||||||||||||||||||| | || |||||
Sbjct 719 TATGTCTACAATTTTATGGATCTAAGACTTCTTCATCAGATTGAAA-ATATGGCAAATCC 777
Query 462 TAGAGGATTATGTTGCCTTTCTCATCATTC-T-AATACGTCTGTGC-TCGCTTGCCCCGG 518
|| ||| |||||||||| |||||||| | | ||||| ||||| | | ||||| || ||
Sbjct 778 AAGGGGACTATGTTGCCTCTCTCATCA--CATGAATACATCTGT-CTTGGCTTGTCCAGG 834
Query 519 TCTTCATCGAGGAGAGATTCGAGTTGAACATTTCGGGCTTAACATGGTACAAATCATAAA 578
| ||| |||||||||| | |||||||||||||| |||||||||||||| |||||||| ||
Sbjct 835 TATTCGTCGAGGAGAGGTCCGAGTTGAACATTTTGGGCTTAACATGGTTCAAATCATTAA 894
Query 579 TGCTCATGATTCTAGTATTGCGTGTATGACTTTGACATTGGATGGTTTGTTGCTCGCAAC 638
|||||||||||||| ||| ||||| ||||| |||||||||||||| ||| | || |||||
Sbjct 895 TGCTCATGATTCTAATATCGCGTGCATGACCTTGACATTGGATGGCTTGCTCCTTGCAAC 954
Query 639 TGCTAGTACAAAGGGAACTCTGATTAGAATCTTCAACACTATGGACGGAACTCGTTTGCA 698
||| |||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||
Sbjct 955 TGCCAGTACAAAGGGAACTCTGATTAGAATTTTCAACACGATGGACGGAACTCGTCTGCA 1014
Query 699 AGAGGTACGAAGAGGAGTGGACAGAGCAGATATTTATAGCATTGCACTTTCACCAAACGT 758
|||||| |||||||| ||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 1015 AGAGGTCCGAAGAGGCGTGGACAGAGCAGATATCTATAGCATTGCTCTATCACCAAACGT 1074
Query 759 GCAGTGGCTGGCTGTATCAAGCGACAAGGGGACTGTTCACATTTTCTCTCTTAGAGTTAG 818
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1075 GCAGTGGCTTGCAGTATCAAGCGACAAGGGGACTGTTCACATTTTCTCTCTCAGAGTGAG 1134
Query 819 -GCTAGTTGGGGAGGATTCTTATTCCACTGAAAATGCAG-CTCTCCTGACACAACAAACT 876
| || | |||||||| | || ||||||||| ||| || || || | || || |
Sbjct 1135 AGTTA-TAGGGGAGGACGCATACTCCACTGAACATG-AGACT-TCTT--CA-AA-----T 1183
Query 877 TATTCTACTTCTCTGCAAGGCA-TTGTTTCTCCAACCACTGGTACCAATCCC-GGTTCGT 934
| | | || ||| | | ||||||||||| ||| |||| |||| ||| |||||||
Sbjct 1184 T---C--C--CT--GCA-GCCTCTTGTTTCTCCAGCCAGTGGTGCCAA-CCCTGGTTCGT 1232
Query 935 CATTGTCGTTTATGAGAGGTGTTCTACCAAAGTATTTCAGCTCGGAATGGTCATATGCAC 994
||||||| ||| ||||||||||||||||||| |||||||||||||||||||||| | | |
Sbjct 1233 CATTGTCTTTTCTGAGAGGTGTTCTACCAAAATATTTCAGCTCGGAATGGTCATTTTCTC 1292
Query 995 AGTTTCATGTATCAGAAGTCACACAATTCTTCGCAGCATTTGGCAG-TAACAACACGGTT 1053
|||| |||||| | |||||||| |||| ||| ||||||||||| | | | ||||| ||
Sbjct 1293 AGTTCCATGTACCTGAAGTCACCCAATACTTTGCAGCATTTGGT-GCTCAGAACACAATT 1351
Query 1054 GCTATTATCGGCATGGATGGAAGTTTTTACAGATGCAGCTTT-GATCCCGTGAACGGAGG 1112
|| ||||| ||| |||| |||||||| ||||| |||| ||| ||||| |||||||||||
Sbjct 1352 GCAATTATTGGCTTGGACGGAAGTTTCTACAGGTGCAA-TTTCGATCCAGTGAACGGAGG 1410
Query 1113 AGAGATGGGGCAACTGGAATATTTCCACTTTCTGAAG 1149
||||||| || || ||| ||||||| |||||||||
Sbjct 1411 AGAGATGACTCAGCTTGAACATTTCCATTTTCTGAAG 1447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57429423480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5