BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg901667

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G36370.1 | Symbols:  | ubiquitin-protein ligases | chr2:1524...   296    1e-79


> AT2G36370.1 | Symbols:  | ubiquitin-protein ligases | chr2:15247793-15252967 
FORWARD LENGTH=2965
Length=2965

 Score =  296 bits (160),  Expect = 1e-79
 Identities = 270/317 (85%), Gaps = 31/317 (10%)
 Strand=Plus/Plus

Query  206  GGCTTA-TCGAGGAATCCTCGTATTTCCATGGCCTTCTAAGTGGAAGCTTCAGTGAATCA  264
            |||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  154  GGCTTATTC-AGGAATCCTCGTATTTCCATGGCCTTCTAAGCGGAAGCTTCAGTGAATCA  212

Query  265  GGCCTTGATCATATCTCTGTTGAATGGAATCC-AGAGACTTTCTTGAATCTTCTCA--TG  321
            ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||  ||
Sbjct  213  GGCCTTGATCATATCTCTGTTGAATGGAA-CCTAGAGAGTTTCTTGAATCTTCTCATGTG  271

Query  322  --TG--T--TT--G-TAT-G-G-TTAC-TCC---A---T-TGA----TATTACAG-CTGC  356
              ||  |  ||  | ||| | | |||| |||   |   | | |    ||||  || ||||
Sbjct  272  TTTGTATGGTTACGATATAGAGATTACATCCAGTAGTTTCTTACCTCTATTTGAGTCTGC  331

Query  357  GCTTTATTTTGGGGTGGCGAGGCTTCTCTCTAAATGCAAAAGCTGGCTTTCAGTTTTGGC  416
             || || |||||||||| || ||||||||||| |||||||| |||||||||||| |||||
Sbjct  332  ACTCTACTTTGGGGTGGAGAAGCTTCTCTCTATATGCAAAAACTGGCTTTCAGTGTTGGC  391

Query  417  ATCATCGAATGACACCGCATTACCGAAACTAGAATTGTCTGACCTTATTCAGATTTGGAG  476
            |||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct  392  ATCATCGAATGACAACGCATTACCGAAAGTAGAATTATCTGACCTTATTCAGATTTGGAG  451

Query  477  TTTTGGTCTCGAGCATG  493
            |||||||||||||||||
Sbjct  452  TTTTGGTCTCGAGCATG  468


 Score =  158 bits (85),  Expect = 6e-38
 Identities = 114/127 (90%), Gaps = 5/127 (4%)
 Strand=Plus/Plus

Query  44   ATCAAC--GA-GAGGCATCTTCTTCGAGTCAAGAGATTTCGATCTCAGCTTCTGAAATCG  100
            ||||||  || || ||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct  31   ATCAACAAGACGACGCATCTTCTTCGATTCAAGAGATTTCGATCTCAGCTTCTGAAATTG  90

Query  101  -TATCCTGGGGTTTGTCAAAAATACTCTCTTACGGAAGAGTAAAAGTTCGAGCTCATCGA  159
             | ||||||| | ||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct  91   CT-TCCTGGGATATGTCAGAGATACTCTCTTACGGAAGTGTAAAAGTTCGAGCTCATCGA  149

Query  160  ACTAGGC  166
            |||||||
Sbjct  150  ACTAGGC  156



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23760751531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5