BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg901667 Length=498 Score E Sequences producing significant alignments: (Bits) Value AT2G36370.1 | Symbols: | ubiquitin-protein ligases | chr2:1524... 296 1e-79 > AT2G36370.1 | Symbols: | ubiquitin-protein ligases | chr2:15247793-15252967 FORWARD LENGTH=2965 Length=2965 Score = 296 bits (160), Expect = 1e-79 Identities = 270/317 (85%), Gaps = 31/317 (10%) Strand=Plus/Plus Query 206 GGCTTA-TCGAGGAATCCTCGTATTTCCATGGCCTTCTAAGTGGAAGCTTCAGTGAATCA 264 |||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 154 GGCTTATTC-AGGAATCCTCGTATTTCCATGGCCTTCTAAGCGGAAGCTTCAGTGAATCA 212 Query 265 GGCCTTGATCATATCTCTGTTGAATGGAATCC-AGAGACTTTCTTGAATCTTCTCA--TG 321 ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| || Sbjct 213 GGCCTTGATCATATCTCTGTTGAATGGAA-CCTAGAGAGTTTCTTGAATCTTCTCATGTG 271 Query 322 --TG--T--TT--G-TAT-G-G-TTAC-TCC---A---T-TGA----TATTACAG-CTGC 356 || | || | ||| | | |||| ||| | | | | |||| || |||| Sbjct 272 TTTGTATGGTTACGATATAGAGATTACATCCAGTAGTTTCTTACCTCTATTTGAGTCTGC 331 Query 357 GCTTTATTTTGGGGTGGCGAGGCTTCTCTCTAAATGCAAAAGCTGGCTTTCAGTTTTGGC 416 || || |||||||||| || ||||||||||| |||||||| |||||||||||| ||||| Sbjct 332 ACTCTACTTTGGGGTGGAGAAGCTTCTCTCTATATGCAAAAACTGGCTTTCAGTGTTGGC 391 Query 417 ATCATCGAATGACACCGCATTACCGAAACTAGAATTGTCTGACCTTATTCAGATTTGGAG 476 |||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 392 ATCATCGAATGACAACGCATTACCGAAAGTAGAATTATCTGACCTTATTCAGATTTGGAG 451 Query 477 TTTTGGTCTCGAGCATG 493 ||||||||||||||||| Sbjct 452 TTTTGGTCTCGAGCATG 468 Score = 158 bits (85), Expect = 6e-38 Identities = 114/127 (90%), Gaps = 5/127 (4%) Strand=Plus/Plus Query 44 ATCAAC--GA-GAGGCATCTTCTTCGAGTCAAGAGATTTCGATCTCAGCTTCTGAAATCG 100 |||||| || || ||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 31 ATCAACAAGACGACGCATCTTCTTCGATTCAAGAGATTTCGATCTCAGCTTCTGAAATTG 90 Query 101 -TATCCTGGGGTTTGTCAAAAATACTCTCTTACGGAAGAGTAAAAGTTCGAGCTCATCGA 159 | ||||||| | ||||| | ||||||||||||||||| ||||||||||||||||||||| Sbjct 91 CT-TCCTGGGATATGTCAGAGATACTCTCTTACGGAAGTGTAAAAGTTCGAGCTCATCGA 149 Query 160 ACTAGGC 166 ||||||| Sbjct 150 ACTAGGC 156 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23760751531 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5