BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901715
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38050.1 | Symbols: DET2, DWF6, ATDET2 | 3-oxo-5-alpha-stero... 1110 0.0
> AT2G38050.1 | Symbols: DET2, DWF6, ATDET2 | 3-oxo-5-alpha-steroid
4-dehydrogenase family protein | chr2:15921136-15922313
REVERSE LENGTH=1093
Length=1093
Score = 1110 bits (601), Expect = 0.0
Identities = 730/792 (92%), Gaps = 9/792 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGAGATCGCCGATCAAACCTTCTTCC-ACTACTGTCTCCTCACCCTAATTTTCTC 59
|||||||| ||||||||| |||||||||||| | |||||||||||||| || |||||| |
Sbjct 138 ATGGAAGAAATCGCCGATAAAACCTTCTTCCGA-TACTGTCTCCTCACTCTTATTTTCGC 196
Query 60 CGGTCCACCTACCGCCGTCGC-TCTGAAATTCCTCCAAGCTCCTTACGGAAAACACAACC 118
||| ||||| ||||||||| | ||||||||||||||||||||||||||| ||||||||||
Sbjct 197 CGGCCCACCAACCGCCGTC-CTTCTGAAATTCCTCCAAGCTCCTTACGGTAAACACAACC 255
Query 119 GTAGAGGATGGGGTCCAACCGTATCTCCGCCGATTGCTTGGTTCGTCATGGAGAGCCCAA 178
||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 256 GTACCGGATGGGGTCCCACCGTATCTCCACCGATTGCTTGGTTCGTCATGGAGAGCCCAA 315
Query 179 CCTTGTGGCTCACACTTCTCATCTTTCCCTTTGGTCGTCACGctctcaatcctaaatctc 238
||||||||||||| || ||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct 316 CCTTGTGGCTCACTCTCCTCCTCTTCCCCTTTGGTCGTCACGCTCTCAACCCTAAATCTC 375
Query 239 tccttctcttctctccttatctcctccATTACTTCCACCGTACCATCATTTACCCTCTCC 298
| ||||| ||||||||||||||| | |||||||||||||| ||||||||||||||||| |
Sbjct 376 TACTTCTATTCTCTCCTTATCTCATTCATTACTTCCACCGCACCATCATTTACCCTCTTC 435
Query 299 GCCTCTTCCGCAGCTCC-T--CCGCTGGGAAAAACGGGTTTCCGATCACCATCGCCG-CT 354
||||||||||||||||| | |||| || |||||||| ||||||||||||||||||| ||
Sbjct 436 GCCTCTTCCGCAGCTCCTTCCCCGCCGGTAAAAACGGATTTCCGATCACCATCGCCGCCT 495
Query 355 ATGGCTTTCACCTTTAATCTCCTCAACGCTTATATCCAGGCGAGGTGGGTTTCGCATTAT 414
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 496 -TGGCTTTCACCTTTAATCTCCTCAATGGTTATATCCAGGCGAGGTGGGTTTCGCATTAC 554
Query 415 AAGGACGACTACGAAGACGGAAAGTGGTTCTGGTGGAGGTTTATCATTGGTATGGTGGTT 474
||||| ||||||||||||||||| |||||||||||| ||||| | || ||||||||||||
Sbjct 555 AAGGATGACTACGAAGACGGAAACTGGTTCTGGTGGCGGTTTGTTATCGGTATGGTGGTT 614
Query 475 TTTGTAGCCGGTATGTATATTAATATCACATCGGACCGGACTTTGGTACGAATGAAGAAA 534
|| || |||| |||||||| |||||||| ||||||||||||||||||||| ||||||||
Sbjct 615 TTCATAACCGGCATGTATATAAATATCACGTCGGACCGGACTTTGGTACGATTGAAGAAA 674
Query 535 GAGAACCGGGGAGGTTATGTGATACCGAGAGGAGGCTGGTTCGAGCTCGTTAGCTGTCCG 594
||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 675 GAGAACCGGGGAGGTTATGTGATACCGAGAGGAGGCTGGTTCGAGTTGGTAAGCTGTCCG 734
Query 595 AATTACTTTGGAGAGGTGATTGAGTGGCTGGGCTGGGCTGTTATGACTTGGTCTTGGGCC 654
||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 735 AATTATTTTGGAGAGGCGATTGAGTGGTTGGGCTGGGCTGTTATGACTTGGTCTTGGGCC 794
Query 655 GGTATTGGATTTTTTCTGTACACGTGTTCTAATTTGATTCCGCGTGCACGTGCGAGTCAC 714
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 795 GGTATTGGATTTTTTCTGTACACGTGTTCCAATTTGTTTCCGCGTGCACGTGCGAGTCAC 854
Query 715 AAGTGGTACATTGACAAGTACAAGGAAGAGTATCCCAAGACTCGTAGAGCTGTTATTCCT 774
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 855 AAGTGGTACATTGCCAAGTTCAAGGAAGAGTATCCCAAGACTCGTAAAGCTGTTATTCCT 914
Query 775 TTTGTGTACTGA 786
||||||||||||
Sbjct 915 TTTGTGTACTGA 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38228185867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5