BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901726
Length=2253
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38150.1 | Symbols: | alpha 1,4-glycosyltransferase family ... 1748 0.0
AT2G38152.1 | Symbols: | alpha 1,4-glycosyltransferase family ... 1103 0.0
> AT2G38150.1 | Symbols: | alpha 1,4-glycosyltransferase family
protein | chr2:15981700-15982917 REVERSE LENGTH=1218
Length=1218
Score = 1748 bits (946), Expect = 0.0
Identities = 1082/1148 (94%), Gaps = 7/1148 (1%)
Strand=Plus/Plus
Query 1111 GAATCTCCGAACTCTACTGTCTCTGATAATAACCCACCGTTCAAACCAAACGTGCCTCTT 1170
|||||||| || || ||| ||| ||| ||||||| |||||||||||||||||||||||||
Sbjct 73 GAATCTCCAAAATCAACTCTCTATGACAATAACCTACCGTTCAAACCAAACGTGCCTCTT 132
Query 1171 CCCAGACCCTATGGCCCCATGAGTAGTAGCTGTAATATCAACTCAGTTTTGGACTCGGAG 1230
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 133 CCCAGACCCTATGGCCCCATGAGTAGTAGTTGTAATATCAACTCAGTTGTGGACTCGGAG 192
Query 1231 TATAACGAAAAGGAGTTAGATCCGTTGGTGCCTCCTCGTAAAGCTAGCAAGAACGAGAGA 1290
|||| || |||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 193 CATAAAGAGAAGGAGTTAGATCCGTTGTTACCTCCTCGTAAAGCTAGCAAGAACCAGAGA 252
Query 1291 ATTGACTGGTTCAGAAGAAAGCTACCTGAGCTGGAGATACTGAAATCGACTACCAAGAAC 1350
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 253 ATTGACTGGTTCAGAAGAAAGCTACCTGAGCTGGAGATACTGAAATCGACTACCAAGAGC 312
Query 1351 AAGAGATTCCATAAAAGAGTTTTGGACTTGTACATCAACAATTGCTCAGCTCAGTTCTTT 1410
||||| ||||||| |||||||||||||||||||| ||| |||||||| ||||||||||||
Sbjct 313 AAGAGTTTCCATACAAGAGTTTTGGACTTGTACAACAAGAATTGCTCTGCTCAGTTCTTT 372
Query 1411 ATGATCTGGCTTTCTCCCGCAAAATCCTTTGGACCAAGAGAGATGTTAGC-AGTTGACAC 1469
||||| ||||||||||| ||||| || ||||||||||||||||||||||| | |||| ||
Sbjct 373 ATGATTTGGCTTTCTCCTGCAAATTCTTTTGGACCAAGAGAGATGTTAGCTA-TTGATAC 431
Query 1470 TCTCTTCACCACCAATCCTGGTGCTTGCTTGGCGATTTTGTCCAACTCCTTAGACTCCCC 1529
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 432 TCTCTTCACCACCAATCCTGGTGCTTGCTTGGCGATTTTGTCCAACTCCTTAGACT-CCC 490
Query 1530 CAGA-GGATACACCATCCTTAAACCATTGCTTGATCGAGGTTTCAACCTCATTGCTGTAA 1588
|| | |||||||| ||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 491 CAAACGGATACACTATCCTTAAACCATTGTTTGATCAAGGTTTCAACCTCATTGCTGTAA 550
Query 1589 CTTTAGATATCCCGTTCCTCGTCAAGAACACTCCTGCCGAGGCTTGGCTGAAAAGGCTAA 1648
|| ||||||||||||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 551 CTATAGATATCCCGTTTCTCGTCAAGAACACTCCTGCTGAAGCTTGGCTGAAAAGGCTAA 610
Query 1649 AGAGTGGCCACATGGATCCCGGTTCTATCCCCTTGTTTATGAATCTCTCTGATCTAACAA 1708
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 611 AGAGTGGCAACATGGATCCCGGTTCTATCCCCTTGTTCATGAATCTCTCTGATCTAACAA 670
Query 1709 GACTCGCGGTACTCTACAAATACGGAGGAGTCTATCTAGACACAGACATCATCTTCCTTA 1768
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 671 GACTCGCAGTACTCTACAAATACGGAGGAGTCTATCTAGACACAGACATCATCTTCCTCA 730
Query 1769 ACGATATGACAGGACTGAGAAACGCTATTGGTGCACAGAGTATTGATCCAGGAACCAAGA 1828
|||| ||||||||||| |||||||||||||| |||||||||| |||||||| ||||||||
Sbjct 731 ACGACATGACAGGACTAAGAAACGCTATTGGAGCACAGAGTAGTGATCCAGCAACCAAGA 790
Query 1829 GATGGACAAGACTAAACAACGCAGTGATGGTCTTTGACATCTACCATCCGCTTATGCGAG 1888
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 791 GATGGACGAGACTAAACAACGCAGTGATGGTCTTTGACATCTACCATCCGCTAATGCGAG 850
Query 1889 AATTCTTGCAAGAGTATGCCACAACATTCGACGGAAACAGATGGGGATACAACAGCCCTT 1948
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 851 AATTCTTGCAAGAGTATGCCACAACTTTCGACGGAAACAAATGGGGATACAACAGCCCTT 910
Query 1949 ACTTAGTCTCTAGAGTTATCAAGAGATTAGGAAACAAACCTGGATACAAC---CTCACAA 2005
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 911 ACCTAGTCTCTAGAGTTATCAAGAGATTAGGAAACAAACCTGGATACAACAATCTCACAA 970
Query 2006 TCTTTTCCCCCGACGCTTTCTATCCAGTGAATTGGATCAAAATCCAAAAGCTTTTCAAGA 2065
||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 971 TCTTTTCTCCCGATGCTTTCTATCCAGTAAACTGGATCAAAATCCAAAAGCTTTTCAAGA 1030
Query 2066 AACCTGCAACCACAAGAGAAGCAAAATGGGTAGAGAAGACGGTACAGGACATGAACAAAG 2125
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1031 AACCTGCAACCACAAGAGAAGCAAAATGGGTAGAGAAGACAGTACAGGACATGAACAAAG 1090
Query 2126 GGAGTTACATGATACATCTGTGGAACAAAGTCACAAGGAAGATTAAGATTGAAGAAGGAA 2185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 GGAGTTACATGATACATCTGTGGAACAAAGTCACAAGGAAGATTAAGATTGAAGAAGGAA 1150
Query 2186 GTGTAATGCACACTCTCATCTCCACTCATTGCACAGTCTGCAGAAACATCACAAATTCCC 2245
||||||||||||||||| |||||||||| |||||||||||| ||||||||||||| || |
Sbjct 1151 GTGTAATGCACACTCTCGTCTCCACTCACTGCACAGTCTGCGGAAACATCACAAACTCTC 1210
Query 2246 ACACTTAA 2253
||| ||||
Sbjct 1211 ACATTTAA 1218
> AT2G38152.1 | Symbols: | alpha 1,4-glycosyltransferase family
protein | chr2:15984062-15985278 REVERSE LENGTH=1143
Length=1143
Score = 1103 bits (597), Expect = 0.0
Identities = 703/754 (93%), Gaps = 8/754 (1%)
Strand=Plus/Plus
Query 362 CAGAGT-TTTTCGGGAAGAGAGAAATTTTGGCTGTAGAAAGCGTCTTTAAATCTCATCCT 420
|||||| |||| ||||| |||||||| || ||||||||||||||||||||| ||||||||
Sbjct 326 CAGAGTATTTT-GGGAAAAGAGAAATGTTAGCTGTAGAAAGCGTCTTTAAAGCTCATCCT 384
Query 421 CAAGGATGCTTAATGATTGTATCGGGATCCTTGGATT-CTCAACAAGGAGATAGCATCCT 479
||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||
Sbjct 385 CAAGGATGCTTAATGATTGTATCAGGATCCTTGGATTCCT-TACAAGGAGATAGCATCCT 443
Query 480 AAAACCGCTAATTGATCGCGGTTACAAGGTTTTTGCAGCCACACCAGACATTTCATTGCT 539
||| ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 444 AAAGCCGCTAAATGATCGCGGTTACAAAGTTTTTGCAGCCACACCAGACATGTCATTGCT 503
Query 540 TCTTGAGAACACCCCGGCTAAATCTTGGTTTCAAGAAATGAAAAGCTGCAAAAGAGATCC 599
|||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 504 TCTTGAGAACACACCGGCCAAATCTTGGTTTCAAGAAATGAAAAGTTGCAAAAGAGATCC 563
Query 600 GGGAAAGATACCGTTACAGCAGAATCTTTCAAACCTCGCGAGGCTAGCAATTCTTTACAA 659
|||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 564 AGGAAGGATACCGTTACATCAGAATCTTTCAAACCTCGCGAGGCTAGCGTTTCTTTACAA 623
Query 660 GTACGGAGGTGTGTACCTAGATACCGATTTCATCGTCACAAGGAGCTTTAAAGGGTTGAA 719
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 624 GTACGGAGGTGTGTATCTAGATACCGATTTCATCGTCACAAGAAGCTTTAAAGGGTTGAA 683
Query 720 GAATACTATTGGCGCACAAACAGTGGTGGAAGGAGATTCAAAGAACTGGACAAGGTTGAA 779
|||| | || || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 684 GAATTCAATAGGAGCACAAACAGTAGTGGAAGGAGATTCAAAGAACTGGACAAGGTTGAA 743
Query 780 CAACGCGGTTCTGATCTTCGAGAAAGATCACCCGCTTGTTTTCAGTTTCATAGAGGAGTT 839
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 744 CAATGCGGTTCTGATCTTCGAGAAAGATCACCCGCTTGTTTACAGTTTCATAGAGGAGTT 803
Query 840 TGCTTCGACTTTTGATGGGAACAAATGGGGACACAATGGTCCTTACTTGGTAACCAGAGT 899
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 804 TGCTTCTACCTTTGATGGGAACAAATGGGGACACAATGGTCCTTACTTGGTAACAAGAGT 863
Query 900 AGCGCAAAGAGCACGAGAAACGACTGGGGACAATTTCACAGTACTGCCACCAGTAGCATT 959
||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 864 AGCACAAAGAGCACGAGAAACGATTGGGGATAATTTCACAGTACTGCCACCAGTAGCATT 923
Query 960 CTATCCATTCACTTGGTTAAACATTCCAAGACTGTTTCAAACGCCAAGGAGCA-GCAATG 1018
||||||||||| ||||||| ||||||||||||||||||||||||| || || | ||||||
Sbjct 924 CTATCCATTCAATTGGTTAGACATTCCAAGACTGTTTCAAACGCCGAG-AGGAAGCAATG 982
Query 1019 ACTCGA-GAATACTCAAAACCGATCTGGTGAAGCTGAACAGAGAAAGCTATGGGCTGCAT 1077
|||| | | |||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 983 ACTCAACGT-TACTCAAAACCGATCTGGTGAAGCTGAATAGAGAAAGCTATGGGCTTCAT 1041
Query 1078 CTATGGAACAAGATCACCAGAAAACTTAAGATCG 1111
||||||||||| |||||||||||||| |||||||
Sbjct 1042 CTATGGAACAAAATCACCAGAAAACTGAAGATCG 1075
Score = 449 bits (243), Expect = 4e-125
Identities = 278/295 (94%), Gaps = 2/295 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAATGATAATTGTAACAAGAAGAGTCTCTCAGAAGTACTTGATGTCCGGCAATTC 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAGGATAATTGTAACAAGAAGAGTCTCTCAGAAGTACTTGATGTCCGGCAATTC 60
Query 61 AGGCACACGAATTCCCCGGTATTCTCTACCGCCATTTTCGGGGTCATAGTGCTGCTCGTT 120
|||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||
Sbjct 61 AGGCACACGAATTCCCCGGTATTCTCTACCGCCATTTTTGCGGTCATAATGCTGCTCGTT 120
Query 121 GTCGCGGGAACAATCGTCTCAAACATGTCACTAGAATCAACTTTCTTCTGGTCTTCACCG 180
||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 121 GTCGCGGGAACAATCCTCTCAAACATGTCCCTAAAATCAACTTTCTTCTGGTCTTCACCA 180
Query 181 ACCTCTGAGGTAATACAAATAAACAAAATGGAGAGAAAGTCATTGGCTCCTCCAAAGAAC 240
||||| ||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||
Sbjct 181 ACCTCCGAGGTAATACAAACAAACAGAATGGAGAGGAAGTCATTGGCTCCTCCAAAGAAC 240
Query 241 AGTACAAGCAGAGAGAGGATCGCTTGGCTTCGA-TCACATCTTACAGAATTCGAG 294
| |||||||||||| |||||||||||||||| | |||||||| ||||||||||||
Sbjct 241 ACTACAAGCAGAGACAGGATCGCTTGGCTTC-ACTCACATCTAACAGAATTCGAG 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111796613715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5