BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901732
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38250.1 | Symbols: | Homeodomain-like superfamily protein ... 1458 0.0
> AT2G38250.1 | Symbols: | Homeodomain-like superfamily protein
| chr2:16018357-16019500 FORWARD LENGTH=897
Length=897
Score = 1458 bits (789), Expect = 0.0
Identities = 848/876 (97%), Gaps = 6/876 (1%)
Strand=Plus/Plus
Query 1 ATGGATGGACATCAGCATCATCACCTTCACCAGCTTCAATATCTCAACAAGCATCATCTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 28 ATGGATGGACATCAGCATCATCACCTTCACCAGCTTCAATATCTCAACAAGCATCATCTT 87
Query 61 CATCATCCTCAATCGCAAACGCCGGAAATAGCGTCTCCGGTAGCGGTTGGGGATAGATTT 120
||| | ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 88 CAT-A--CTCAATCGCAAACGCCGGAAATAGCCTCTCCGGTAGCTGTTGGGGATAGGTTT 144
Query 121 CCACAGTGGAGCGTTGAAGAGACAAAAGAGTTGATAGGGATAAGAGGAGAGCTAGATCAG 180
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 CCACAGTGGAGCGTCGAAGAGACAAAAGAGTTGATAGGGATAAGAGGAGAGCTAGATCAA 204
Query 181 ACTTTCATGGAGACAAAACGGAACAAGCTTCTTTGGGAAGTTATCTCTAACAAGATGAGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 ACTTTCATGGAGACAAAACGGAACAAGCTTCTTTGGGAAGTTATCTCTAACAAGATGAGA 264
Query 241 GACAAAAGCTTTCCTCGTAGCCCTGAACAGTGCAAATGCAAGTGGAAGAACCTCGTCACT 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 265 GACAAAAGCTTTCCTCGTAGCCCTGAACAGTGCAAGTGCAAGTGGAAGAACCTCGTCACT 324
Query 301 CGTTTTAAGGGATGTGAGACAATGGAGGCAGAGACAGCGAGACAACAGTTCCCTTTTTAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 CGTTTTAAGGGATGTGAGACAATGGAGGCAGAGACAGCGAGACAACAGTTCCCTTTTTAT 384
Query 361 GATGATATGCAAATTATATTTACCACTAGAATGCAGAGAATGCTATGGGCTGAATCCGAG 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 GATGATATGCAAAATATATTTACCACTAGAATGCAGAGAATGCTATGGGCTGAATCCGAG 444
Query 421 GGAGGAGGAGGGGGAACAAGCGGGACAGCGAGAAAGAGAGAGTATTCTTCAGAAGAGGAT 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 445 GGAGGAGGAGGGGGAACAAGCGGGGCAGCGAGAAAGAGAGAGTATTCTTCAGATGAGG-- 502
Query 481 CAAGAAGAGAATGTGAATGAAGAGCTAGTAGATGTTAGCAACGACCCGAAAATCCTAAAC 540
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 503 -AAGAAGAGAATGTGAATGAAGAGCTAGTAGATGTCAGCAACGACCCAAAAATTCTAAAT 561
Query 541 CCGAAAAAGAACATTGCAAAGAAGCGAAAAGGCGGTAGTAATAGTAGTAGTATCAATATT 600
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 562 CCGAAAAAGAACATTGCAAAGAAGCGAAAAGGCGGTAGTAATAGTAGTAATAGCAATAAT 621
Query 601 GGTGTTAGAGAAGTGTTGGAAGAGTTTATGAGACATCAAGTgaggatggagagcgagtgg 660
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 622 GGTGTAAGAGAAGTGTTGGAAGAGTTTATGAGACATCAAGTGAGAATGGAGAGCGAGTGG 681
Query 661 agagaagtatgggaagcgagggagaaggaaagagcagagaaagaagaagaatggagaagg 720
||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 AGAGAAGGATGGGAGGCTAGGGAGAAGGAAAGAGCAGAGAAAGAAGAAGAATGGAGAAGG 741
Query 721 aagatggaggatcttgagaaggagaggTTGGCAATGGAGCGGATGTGGCGGGATAGAGAG 780
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 AAGATGGAGGAGCTTGAGAAGGAGAGGTTGGCAATGGAGCGGATGTGGCGGGATAGAGAG 801
Query 781 GAGCAACGGCGGTCGAGGGAGGAGATGAGAGCAGAGAAGAGGGATTCACTTATCAATGCA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 GAGCAACGGCGGTCGAGGGAGGAGATGAGAGCAGAGAAGAGGGATTCACTTATCAATGCA 861
Query 841 TTGCTTGCTAAGCTTACTAGAGATGGTTCCCTCTAA 876
||||||||||||||||||||||||||||||||||||
Sbjct 862 TTGCTTGCTAAGCTTACTAGAGATGGTTCCCTCTAA 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42749259097
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5