BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg901734

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G38370.1 | Symbols:  | Plant protein of unknown function (DU...   248    3e-65


> AT2G38370.1 | Symbols:  | Plant protein of unknown function (DUF827) 
| chr2:16072070-16074258 REVERSE LENGTH=1773
Length=1773

 Score =  248 bits (134),  Expect = 3e-65
 Identities = 165/179 (92%), Gaps = 5/179 (3%)
 Strand=Plus/Plus

Query  97   GGAATGTTGAATGAGGTTCAAAGATTGAGCCGTGAAGCTCAAGAGGTGAAGAAAACAGGA  156
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct  703  GGAATGTTGAATGAGGTTCAAAGATTGAGCCGTCAAGCTCAAGAGGTGAAGAAAACCGGA  762

Query  157  GAGAATGCACAGTCGGAAGTTGTGAAAGCAATGG---AGA-TCGAAAGCACAAGAGACAA  212
            ||||||||| ||| ||||||||||||||||||||   ||| | |||||||||||||| ||
Sbjct  763  GAGAATGCAGAGTTGGAAGTTGTGAAAGCAATGGCTGAGACT-GAAAGCACAAGAGATAA  821

Query  213  GATTAGAACAGCTAAGGTTAGGTTGGTGGCTGCAAGAAAGATGAAGGAAGCAGCCAGAG  271
            |||||||||||||||| | |||||||||||||| ||||||||||||||||| |||||||
Sbjct  822  GATTAGAACAGCTAAGATAAGGTTGGTGGCTGCTAGAAAGATGAAGGAAGCGGCCAGAG  880



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16889963664


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5