BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901750
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38370.1 | Symbols: | Plant protein of unknown function (DU... 1531 0.0
> AT2G38370.1 | Symbols: | Plant protein of unknown function (DUF827)
| chr2:16072070-16074258 REVERSE LENGTH=1773
Length=1773
Score = 1531 bits (829), Expect = 0.0
Identities = 1016/1103 (92%), Gaps = 25/1103 (2%)
Strand=Plus/Plus
Query 457 GAGGAGACAGCTGCACTTGAGAAGACACGCGAGAGACTTATGCAGAAATCTCTCAAGGTG 516
||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 574 GAGGAAAGAGCTGCACTTGAGAAGACACGCGAGAGACTTATGGAGAAATCTCTCAAGGTG 633
Query 517 ATTTCTTTAGAGGAAGAAGAAGTGAGAGTAAGATTTGCAAAGGAGGGTGAAACTGATGAG 576
||||||||||||||||||||||||||||||||||||| ||||||||| |||| | | |
Sbjct 634 TTTTCTTTAGAGGAAGAAGAAGTGAGAGTAAGATTTGCCAAGGAGGGTCAAACCG--GCG 691
Query 577 AAAGATTTAGAGAATAATGCGTTGGGAATGTTGAATGAGGTTCAAAGATTGAGCCGTGAA 636
||| | || || | || ||||||||||||||||||||||||||||||||| ||
Sbjct 692 --AGA---A-AG----AT-C-TT-GGAATGTTGAATGAGGTTCAAAGATTGAGCCGTCAA 738
Query 637 GCTCAAGAGGTGAAGATAACAGGAGAGAATGCACAGTCGGAAGTTGTGAAAGCAATGGCG 696
|||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||||||
Sbjct 739 GCTCAAGAGGTGAAGAAAACCGGAGAGAATGCAGAGTTGGAAGTTGTGAAAGCAATGGCT 798
Query 697 GAGATC-GAAAGCACAAGAGACAAGATTAGAACAGCTAAGATTAGGTTGGTGGCTGCAAG 755
|||| | |||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 799 GAGA-CTGAAAGCACAAGAGATAAGATTAGAACAGCTAAGATAAGGTTGGTGGCTGCTAG 857
Query 756 AAAGATGAAGGAAGCAGCCAGAGCGGCTGAGGCGGTTGCAATCGCAGAGATTGAGGCTGT 815
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 858 AAAGATGAAGGAAGCGGCCAGAGAGGCTGAGGCGGTTGCAATCGCAGAGATTGAGGCTGT 917
Query 816 TACTGGAAGTATAAACGTTGAAAAGGCTGAGGCTGTGACTATCTCTGCTGAAGAGTACGC 875
|||||||||||| || |||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 918 TACTGGAAGTATGAATGTTGGTAAGGCCGAGGCTGTGACTATCTCTGCTGAAGAGTATTC 977
Query 876 TGTGCTTGCTCGTAGTGCTAGAGACGCCGAGGAAGAGGCGAGAAAGAGAGTGGAAGATGC 935
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 978 TGTGCTTGCTCGTAGTGCTAGAGACGCAGAGGAAGAGGCGAGAAAGCGAGTGGAAGATGC 1037
Query 936 AATGTCGAGAGTTGAAGAAGCGAATGTTTCAAAGATGAATGTTCTGAAGAAAGTAGACGA 995
||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||||
Sbjct 1038 AATGTCGAGAGTTGAAGAAGCTAATGTTTCAAAGAAGGATGTTCTGAAGAAAGTTGACGA 1097
Query 996 AGCAGCTCAAGAGATTGAAACCAGCAAGAGGGTATTGGAGGAAGCTGTTGAAAGAGTTGA 1055
||| |||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 1098 AGCGGCTCAAGAAATTGAAACCAGCAAGAGAGTATTGGAGGAAGCTGTGGAGAGAGTTGA 1157
Query 1056 CGCTGCAACTGCTTC-AAAACTCGATGCAGAAGAGGTGCTGCGAAACTGGCGGTCAGAGA 1114
|||||||| |||||| || | |||| |||||||||| ||||||||| |||||||||||||
Sbjct 1158 CGCTGCAAATGCTTCGAAGA-TCGAAGCAGAAGAGGCGCTGCGAAAATGGCGGTCAGAGA 1216
Query 1115 ATGGACAGAGGAGAAGATTATCTTCTTCGGTAAACAACACTTCTAAGTTCAAGAGCA-AA 1173
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct 1217 ATGGACAGAGGAGAAGATTATCTTCTTCGGTGAACAACACTTCCAAGTTCAAGAGCAGAA 1276
Query 1174 -AGAGA-GTCAACGCGTCTGATGGATGTAAATGGTCTGCATCTGACATACGATGTTGTTC 1231
||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1277 GAGAGACAACAACACGTCTGATGGATGTAAACGGTCTGCATCTGACATACGATGTTGTTG 1336
Query 1232 ACGGGTCATCATCTTCTTC-A--GTCCCAGTCTTGAAGCCAACAATGTCAATAGGGCAAA 1288
||||||||||||||||||| | |||||||||||||| ||||||||||||||||| ||||
Sbjct 1337 ACGGGTCATCATCTTCTTCAACGGTCCCAGTCTTGAAACCAACAATGTCAATAGGACAAA 1396
Query 1289 TACTCAGCAAGAAGCTACTTCTTGCAGAGGATTCAGATATGAATGTTGCTAATGAGAGAA 1348
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 TACTGAGCAAGAAGCTACTTCTTGCAGAGGATTCAGATATGAATGTTGCTAATGAGAGAA 1456
Query 1349 GAAAAATGTCATTGGGTCAGATGCTTGCAAAGAATAGCAATAGTGATAAAACTGTAAGCA 1408
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1457 GAAAAATGTCGTTGGGTCAGATGCTTGCAAAGAATAGCAGTAGTGATAAAACTGTAAGCA 1516
Query 1409 AGAGGAGTGAAGGGAAAGAAAACGGGAAAAGGTCGACGACTCGAAAGAGAAAGAGTTTCG 1468
|||| |||||||||||||| || | ||||||| ||| |||||||||||||||||||||||
Sbjct 1517 AGAGAAGTGAAGGGAAAGAGAATGAGAAAAGGACGAAGACTCGAAAGAGAAAGAGTTTCG 1576
Query 1469 GGTTTGCTAAGATCTCTGTGTTGTTGAACaaagagagcaagaataagaagaagaagaaaa 1528
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1577 GATTTGCTAAGATCTCTGTGTTGTTGAACAAAGAGAGCAAGAACAAGAAGAAGAAGAAAA 1636
Query 1529 agaTAGCTTTGAACTTAAGGTGA 1551
|||||||||||||||||||||||
Sbjct 1637 AGATAGCTTTGAACTTAAGGTGA 1659
Score = 403 bits (218), Expect = 2e-111
Identities = 265/287 (92%), Gaps = 6/287 (2%)
Strand=Plus/Plus
Query 177 AGAAGCTTCTCAGATAGACACTTCTGCTCCGTTCGAGTCAGTGAGAGAAGCAGCCACTCG 236
|||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 155 AGAAGC--CTGAGATAGACACTTCGGCTCCGTTCGAGTCAGTGAGAGAAGCAGCCACTCG 212
Query 237 TTTCGGCGGTTTTGGTTTCTGGAGACCTTCTCACAATAAACTCCCAGAAGCTTCTCAGGA 296
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 213 TTTCGGCGGTTTTGGTTTCTGGAGACCTTCTCTCAATAAACTCCCAGATGCTTCTCAGGA 272
Query 297 AAA-AGTTGAAGAAACTGATATCATTGAACTCAAAGCACAGGCTT-CTGAGCTACAGAGA 354
||| | | ||||| |||||||||| | |||||||||||| |||| | |||||||| |||
Sbjct 273 AAATA-TCCAAGAACCTGATATCATGGGACTCAAAGCACAAGCTTTC-GAGCTACAAAGA 330
Query 355 GATCTAATTGTGAAAGAACGTGAAACGCTAGAGATGTTGAAGGAGCTTGAGGCGACTAAA 414
|| |||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 331 GAACTAATTGTTAAAGAACGCGAAACGCTAGAGGTGTTGAAGGAGCTTGAGGCGACTAAA 390
Query 415 GCCACAGTCTTAAAGCTGCAGCAGAGGAATGAAGTTTATGAGGAGGA 461
|||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 391 GCCACAGTCTTAAAGCTGCAGCAGAGGAATGAAGCTTATGAGGAGGA 437
Score = 204 bits (110), Expect = 3e-51
Identities = 150/167 (90%), Gaps = 11/167 (7%)
Strand=Plus/Plus
Query 33 AGAGCCGGTG-ACTTTAAACCCTGACTCGGATCTGTCGAATGG-C---C---G-AGCC-G 82
||| |||| | ||| ||||||||||||||||||| |||||||| | | | |||| |
Sbjct 105 AGAACCGG-GCACTGTAAACCCTGACTCGGATCTATCGAATGGTCGAGCTGAGAAGCCTG 163
Query 83 AGATAGACACTTCTGCTCCGTTCGAGTCAGTGAGAGAAGCAGCCACTCGTTTCGGCGGTT 142
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 AGATAGACACTTCGGCTCCGTTCGAGTCAGTGAGAGAAGCAGCCACTCGTTTCGGCGGTT 223
Query 143 TTGGTTTCTGGAGACCTTCTCACAATAAACTCCCAGAAGCTTCTCAG 189
||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 224 TTGGTTTCTGGAGACCTTCTCTCAATAAACTCCCAGATGCTTCTCAG 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76555831125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5