BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901770
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38500.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1768 0.0
> AT2G38500.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr2:16117395-16119108
REVERSE LENGTH=1353
Length=1353
Score = 1768 bits (957), Expect = 0.0
Identities = 1035/1073 (96%), Gaps = 4/1073 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCTGATGCGAACCAGGAGCCAATTGAACGTATCTTCATTGACTCCACCACCACCT 60
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 68 ATGGCTCTGATGCGAACCAGGAGCCAGTTGAACGTATCTTCATTGACTCCACCACCTCCT 127
Query 61 CCTCCGTCTCCAATCCCTAGAGCCAGAGGATCTCGTTGCGCTGCCAGCGAGATTCTCACC 120
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 128 CCTCCGTCTCCGATCCCTAGAGCCAGAGGCTCTCGTTGCGCTGCCAGCGAGATTCTCACC 187
Query 121 GAGATCATTGAGCGATCGGTTCAGGTTCCTGAGCTCACGCTTCCGGAATCTCATTCTGGA 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 188 GAGATCATTGAGCGATCGATTCAGGTTCCTGAGCTCACGCTTCCGGAATCTCATTCTGGA 247
Query 181 GGTGAATCTTGCGGTTCACGTCATCTGATCCCGGCGGAGATTGATTTCCGGTTATTGGCG 240
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 248 GGTGAATCTTGCGGCTCACGTCATCTGATCCCGGCGGAGATTGATTTTAGGTTATTGGCG 307
Query 241 TCGAGGAGAGAAGGTTCCGTGGATCGGTTGGTGCGATCGGCGAGAGAGTTTGGAGCGTTT 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 308 TCGAGGAGAGAAGGTTCGGTGGATCGGTTGGTGCGATCGGCGAGAGAGTTTGGGGCGTTT 367
Query 301 CGTGTGAGTTATCATGGGATATCGGGGGAGGAGCTGAGGTCTCTTGTGAGGGAATCGGGT 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 368 CGTGTGAGTTATCATGGGATATCTGGGGAGGAGCTGAGGTCTCTTGTGAGGGAATCGGGT 427
Query 361 CGGGTTTTCGGAGTTTTGGAGGGAAGAGACACCGGCTTTCACCGGAGTGTTGTCGGAAAC 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 428 CGGGTTTTCGGAGTTTTGGAGGGAAGAGACACCGGGTTTCACCGGAGTGTTGTCGGAAAC 487
Query 421 AGGGACGAGATCGTGTGGGTACGGTCGTGGAAAGAGCGCATGGAATGGGCGCGCGAGTAT 480
|| ||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct 488 AGAGACGAGATCGTGTGGGTACGGTCGTGGAAGGAGAGGATGGAATGGGCGCGCGAGTAT 547
Query 481 ATCGGACCGGAAAGATACCGCTGCTTCAGCCAAGAAATGGAGAATGTAGCTGATAAACTT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 ATCGGACCGGAAAGATACCGCTGCTTCAGCCAAGAAATGGAGAATGTAGCTGATAAACTT 607
Query 541 GAAGAGATAGCGAGGAAACTAGGGCAGATAATGGTAGAGAACTCAAGAA-AACAAAGTGA 599
||||| |||||||||||||||||||| |||||||||||||||||||||| | |||| |||
Sbjct 608 GAAGATATAGCGAGGAAACTAGGGCAAATAATGGTAGAGAACTCAAGAAGACCAAA-TGA 666
Query 600 CAAGAGGATACAAAGAGGAGAATCTGTACTCAGCGTTTACAGGTACAATCATGAAAACGT 659
|||| ||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 667 TAAGAAGATACAAAGAGGAGAATCTGTGCTTAGCGTTTACAGGTACAATCATGAAAATGT 726
Query 660 AACTGAGCAAAGCCCTCCTTTGCCGAAAGAGAGGACCGAAGAAATGCTTCATTACACATT 719
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 727 AACTGAGCAAAGCCCTCCTTTGCCCAAAGAGAGGACCGAAGAAATGCTTCATTATACACT 786
Query 720 CAGCCTTCACCTTCCGGCTAAGAACTGCGAGTTCCGCGTCAACTCAGGGAAAGGTCCACT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 CAGCCTTCACCTTCCGGCTAAGAACTGCGAGTTCCGCGTCAACTCAGGGAAAGGTCCACT 846
Query 780 TTCTTTCCATGCTGATCCCGACACTATCCTTGTCACTTTTGGTCGTCAGCTTGAGGATTG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 847 TTCTTTCCATGCTGATCCCGACACTATCCTTGTCACTTTTGGTCGTCAGCTTGAGGAATG 906
Query 840 GAGTTTAGGAGAATTCAAATGTCGTCAAGGAGAAATCATCTATCATCCAGATGCGTATGG 899
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 907 GAGTTTAGGAGAATTCAAATGTCGTCAAGGAGAAATCATCTATCATCCTGATGCATATGG 966
Query 900 CTCGCCCACTTCCTTCTCCGTAGAGCTCAAGTGCATGTCTCTTTTCTTATCACACACTTC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 CTCGCCCACTTCCTTCTCCGTAGAGCTCAAGTGCATGTCTCTTTTCTTATCACACACTTC 1026
Query 960 TATCGCAACAACTTCCAAAACCTTCTCTTTAACCCATCAGATTTTCACTGCTTTCCTCCT 1019
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1027 TATCGCAACAACCTCCAAAACATTCTCTTTAACCCATCAGATTTTCACTGCTTTCCTCCT 1086
Query 1020 ACtttttttCTTCCAATGTTTTTGGATTTATGGATCAA-AAGTGGCCCCTTAG 1071
||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 1087 ACTTTTTTTCTTCCAATGTTTTTGGATTTATGGATCACGAA-TGGCCGCTTAG 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5