BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901790
Length=576
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38690.1 | Symbols: | unknown protein; Has 9 Blast hits to ... 848 0.0
> AT2G38690.1 | Symbols: | unknown protein; Has 9 Blast hits to
7 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa
- 4; Fungi - 2; Plants - 3; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:16176631-16177754 REVERSE LENGTH=935
Length=935
Score = 848 bits (459), Expect = 0.0
Identities = 541/580 (93%), Gaps = 8/580 (1%)
Strand=Plus/Plus
Query 1 ATGATGATCGAAGAACAACTTCAAGAGCGTAACCACAATCTGAGCCTCGAAGACATTGAT 60
||||| || |||||| ||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct 86 ATGATAATGGAAGAAGAACTTCAAGAGCGTAACAACAATCTCAGCCTCGACGACATTGAT 145
Query 61 CTATCTCTCCTCCGTCTCACTTCACCA-CGTGACTACTATTCTCCTTCATCATCCTTGTT 119
|| |||||||||||||||||||||||| ||| || |||| |||||| |||||||||||||
Sbjct 146 CTTTCTCTCCTCCGTCTCACTTCACCACCGT-ACGACTACTCTCCTCCATCATCCTTGTT 204
Query 120 CTCCGCCGAGGAAATCACCCCTCCGTTGAAACGCGCCTCCCCTGTTTCCGACGAATCCGA 179
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 205 CTCCGCCGATGAAATCACTCCTCCATTGAAACGCGCCTCCCCTGTTTCCGACGAATCCGA 264
Query 180 TCTCCCCAAACGCAGGAAAA-TCTCCCCTCAAAACCCAATCTTTGTCACCTCTCCTCGTC 238
|||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||| ||
Sbjct 265 TCTCCCCAAACGCA-GAAAACTCTCCCCTCAAAACCCAATCTTTACCACTTCTCCTCCTC 323
Query 239 TCTTCATTTCCCCGGAAACACAAACTTCCTCTGTTCATGACCCGACCCGGTACACGAATC 298
|||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 324 TCTTCACTTCCCCGGAAACACAAACTTCCTCTGTTCATGACACGAGCCGGTACACGAATC 383
Query 299 TCACTAGCTCTGTTTCGGAAG-AGCAAGAAACGACGCCGTCTGATCCTGATACAGAGACG 357
|||||||||||||||||| || |||||||| |||||||||||| | ||||||||||||||
Sbjct 384 TCACTAGCTCTGTTTCGG-AGAAGCAAGAAGCGACGCCGTCTGTTACTGATACAGAGACG 442
Query 358 ATGAAGATGGTTAACAATTGCGTTGAGAAGATGAAACGTGGAGAGACTAACTATGCTTAT 417
||||||||||||||||| ||||| ||| |||||| ||||||||||||||||||||||||
Sbjct 443 ATGAAGATGGTTAACAAATGCGTAGAGGTGATGAATCGTGGAGAGACTAACTATGCTTAT 502
Query 418 gagaaggagcaagaggaag-tggaagaagaagaagaatgtggaggagggatgaggataga 476
|||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||
Sbjct 503 GAGAAGGAGCAAGAGG-AGTTGGAAGAAGAAGAAGATTGTGGAGGAGGGATGAGGATAGA 561
Query 477 gagatctggagatggGTTTGTAATTAGATTGAAGTGTAAATGCAGACAAGCTTTTAGGGT 536
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 562 GAGATCTGGAGATGGGTTTGTAATTAGATTGAAGTGTAGATGCAGACAAGCTTTTAGGGT 621
Query 537 TCTTTTCTCTGATGATCATCTCTACTTTAAGCCTCTCTAA 576
||||||||||||||||||||||||||| ||||||||||||
Sbjct 622 TCTTTTCTCTGATGATCATCTCTACTTCAAGCCTCTCTAA 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27679014997
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5