BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg901791

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G38695.3 | Symbols:  | unknown protein; Has 56 Blast hits to...   542    2e-153


> AT2G38695.3 | Symbols:  | unknown protein; Has 56 Blast hits 
to 54 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:16177946-16180403 FORWARD 
LENGTH=950
Length=950

 Score =  542 bits (293),  Expect = 2e-153
 Identities = 358/390 (92%), Gaps = 2/390 (1%)
 Strand=Plus/Plus

Query  46   CAATCTCTGCTACCATAT-AGCTTCTCCGTAGTCCACCATAGTCACCGGCTGGTTACCTC  104
            ||||||||||||||| || | |||||||||| || |||| |||||||| || ||||||||
Sbjct  94   CAATCTCTGCTACCACATCA-CTTCTCCGTATTCAACCAAAGTCACCGACTTGTTACCTC  152

Query  105  CTTTAGTCACAATGCTACTAATAAATCTGATGCAGAGTCTGAGCCTTCCTATGATGAAGG  164
            ||| |||||||||| | | || ||||||||||||||| | |||| ||||| |||||||||
Sbjct  153  CTTGAGTCACAATGTTTCCAACAAATCTGATGCAGAGGCAGAGCGTTCCTGTGATGAAGG  212

Query  165  AGAAATGTTGGATAAGAATAGGATAAGCAGGAGAAACCCGTTCGTTTCAGAAGAGCTTCT  224
            ||||||||||||||||||||||||||||| || ||||||||| ||||| |||||||||||
Sbjct  213  AGAAATGTTGGATAAGAATAGGATAAGCAAGAAAAACCCGTTTGTTTCGGAAGAGCTTCT  272

Query  225  CAAGAAATTGAAGAGATATGGAGTCTCTGGAATACTGTCCTATGGGATACTTAATACGGT  284
            |||||| ||||||||||||||| ||||||||||| | ||||||||| |||||||||| ||
Sbjct  273  CAAGAAGTTGAAGAGATATGGACTCTCTGGAATATTATCCTATGGGTTACTTAATACAGT  332

Query  285  CTATTACTCCACAGCTTTCCTCTTGGTGTGGTTTTATGTGGCCCCAGCACCGGGAAAAAT  344
            ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct  333  CTATTACTCCACAGCTTTCCTCTTGGTCTGGTTTTATGTGGCTCCAGCACCGGGAAAAAT  392

Query  345  GGGTTATCTTGCTGCGGCTGAGAGATTTCTTAAAGTTATGGCAATGGTCTGGGCTGGAAG  404
            |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct  393  GGGTTATCTTGCTGCGGCTGAGAGATTTCTTAAAGTGATGGCCATGGTCTGGGCTGGAAG  452

Query  405  CCAAGTTACTAAGCTCATCAGAATAGGAGG  434
            |||||||||||||||||||||||| |||||
Sbjct  453  CCAAGTTACTAAGCTCATCAGAATCGGAGG  482


 Score =  237 bits (128),  Expect = 9e-62
 Identities = 148/158 (94%), Gaps = 0/158 (0%)
 Strand=Plus/Plus

Query  434  GGGCAGTGGCACTTGCACCTATTGTTGATCGAGGATTGTCATGGTTTACAGTAAAATGCA  493
            ||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct  626  GGGCAGTCGCACTTGCACCTATTGTTGATAGAGGATTGTCGTGGTTTACAGTAAAATGCA  685

Query  494  AGTTTGAAAGTCAGGGAAAAGCTTTTGGCGCACTGGTTGGGATATGTCTTGGTCTCGCTT  553
            | ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct  686  ACTTTGAAAGTCAGGGAAAAGCTTTTGGCGCACTGGTTGGGATATGTCTTGGTATGGCTT  745

Query  554  TGATGCTGTTTGTTGTTGTGACACTGCTTTGGTCATAG  591
            ||||||| ||| | |||||||||||||||||| |||||
Sbjct  746  TGATGCTATTTATCGTTGTGACACTGCTTTGGGCATAG  783



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28432527202


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5