BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901794
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38720.1 | Symbols: MAP65-5 | microtubule-associated protein... 2021 0.0
> AT2G38720.1 | Symbols: MAP65-5 | microtubule-associated protein
65-5 | chr2:16188047-16192266 FORWARD LENGTH=1928
Length=1928
Score = 2021 bits (1094), Expect = 0.0
Identities = 1216/1275 (95%), Gaps = 7/1275 (1%)
Strand=Plus/Plus
Query 1 ATGTCTCCGTCTTCAACCACCACTTGCACTTCCCTTCTTGAAGAGTTGCAGATAATATGG 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGTCTCCGTCTTCAACCACTACTTGCACTTCCCTTCTTGAAGAGTTGCAGATGATATGG 60
Query 61 GATGAGATTGGTGAAAGTTACAATGAAAGAGATAAGATGCTGCTAGAACTTGAGCAGGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATGAGATTGGTGAAAGTTACAATGAAAGAGATAAGATGCTGCTAGAACTTGAGCAGGAA 120
Query 121 TGTCTGGATATATACAATAAGAAGGTTGAGAAAACTCGTAAGTACAGAGCTGAGTTACAG 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 TGTCTGGATATATACAATAAGAAGGTTGAGAAAACTCGTAAGTTCAGAGCTGAGTTACAG 180
Query 181 CGATCCTTAGCTCAAGCTGAAGCTGAGATTGCCAGCCTCATGTCTGCGCTTGGTGAAAAA 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGATCATTAGCTCAAGCTGAAGCTGAGATTGCCAGCCTCATGTCTGCGCTTGGTGAAAAA 240
Query 241 GTTTCGTTTCCCAAGAA-A--GAAGGCTCTTTGAAGGAGCAAATATCT-GCTGTAAAGCC 296
||||||||| ||||||| | |||||||||||||||||||| || || | |||||||||
Sbjct 241 GTTTCGTTTGCCAAGAAGAAAGAAGGCTCTTTGAAGGAGCAGATTTCCAG-TGTAAAGCC 299
Query 297 TGTACTGGAAGATCTACTGATGAAAAAGGATCGAAGAAGGAAAGAGCTCTCTGAGACACA 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGTACTGGAAGATCTACTGATGAAAAAGGATCGAAGAAGGAAAGAGCTCTCTGAGACACT 359
Query 357 GACTCAAATAGAAGAGATCTCTTCTAACATAGCGGGGAATGATTATACTGTTTGTTCTGG 416
|| |||||||| ||||||| | ||||||||||| |||||||||||||||||| |||||||
Sbjct 360 GAATCAAATAGCAGAGATCACGTCTAACATAGCAGGGAATGATTATACTGTTAGTTCTGG 419
Query 417 TCCTGAAATTGATGAAAGTGACTTGACACAAAGAAAGTTGGATGAACTTAGAGAACG-TC 475
| | ||| ||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 420 TTCAGAAGTTGATGAAAGTGACTTGACACAAAGAAAGTTGGATGAACTTAGAGCA-GATC 478
Query 476 TGCAGGATCTTCGCAATGAAAAGGCTGTTCGACTGCAGAAAGTAAACTCTTATATCAGTG 535
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGCAGGATCTTCGAAATGAAAAGGCTGTTCGACTGCAGAAAGTAAACTCTTATATCAGTG 538
Query 536 CTGTCCATGAGCTGTCAGAGATTATGTCATTTGATTTCTCCAAGGCCTTGAATAATGTCC 595
||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |||||
Sbjct 539 CTGTCCATGAGCTGTCAGAGATTCTGTCTTTTGATTTCTCCAAGGCCCTGAATAGTGTCC 598
Query 596 ATAGCAGCTTGGCTGACTTTTCAAAGACTCATTCGAAAAGCATTAGTAATGATACTCTTG 655
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATAGCAGCTTGACTGAGTTTTCAAAGACTCATTCGAAAAGCATTAGTAATGATACTCTTG 658
Query 656 CTAGATTAACAGAACTTGTAAAGTCTCTCAAGGAGGAGAAACATGAGAGGCTGCTTAAGC 715
|||| || |||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 659 CTAGGTTCACAGAACTTGTAAAGTCTCTGAAGGCGGAGAAACATGAGAGGCTGCTTAAGC 718
Query 716 TACAAGGTTTGGGAAGAAGCATGCAAGAGCTGTGGAACCTAATGGAAACACCTATGCATG 775
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 719 TACAAGGTTTGGGAAGAAGCATGCAAGAGCTGTGGAACCTAATGGAAACACCTATGGATG 778
Query 776 AGAGGAGAAGATTTGACCATTGCAGTAGCTTACTTTCTGGTCCACCTGATGTTGCCATGA 835
||||||||||||||||||||||||| |||||||||||| ||| |||||||| |||| |||
Sbjct 779 AGAGGAGAAGATTTGACCATTGCAGCAGCTTACTTTCTAGTCTACCTGATGATGCCTTGA 838
Query 836 AAAAAGGATGCCTCGGTCTGGACATTATCCGAGAGGCCGAAGATGAAGTGAAAAGACTCA 895
|||||||||||||| | || ||||||||||||||||||||||||||||||| |||||| |
Sbjct 839 AAAAAGGATGCCTCAGCCTAGACATTATCCGAGAGGCCGAAGATGAAGTGAGAAGACTGA 898
Query 896 ATGCCCTGAAGTCCAGCAAAATGAAGGAATTGGTGTTTAAGAGGCTGTGTGAACTAGAAG 955
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 899 ATTCCCTGAAGTCCAGCAAAATGAAGGAATTGGTGTTTAAGAGGCAGTGTGAACTAGAAG 958
Query 956 AGATCTGTAGAGGGAATCATATGGACATTAATAGTGATGCTGCAAGAAAGAGTCTTGTCG 1015
||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 959 AGATCTGCAGAGGGAATCATATGGATATCAATAGTGATGCTGCAAGAAAGAGTCTTGTCG 1018
Query 1016 ACCTCATTGAATCTGGTGATGGTGATCTGTCTGATATTCTTACAAGAATAGATGGTCAGA 1075
| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1019 AACTCATTGAATCTGGTGATGGTGATCTGTCTGATATTCTTGCAAGCATAGATGGTCAGA 1078
Query 1076 TCGAGAAGGCAAGAGAAGAAGCTTTAAGCAGAAAGGAAATTTTGGACAAAGTTGATAAGT 1135
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1079 TCGAGAAGGCAAGAGAAGAAGCTTTAAGCAGAAAGGAAATATTGGACAAAGTTGATAAGT 1138
Query 1136 GGAGACATGCAAAGGAGGAAGAAACATGGCTTGATGACTATGAAAAGGATGAAAATCGCT 1195
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1139 GGAGACACGCAAAGGAGGAAGAAACATGGCTTGATGATTATGAAAAGGATGAAAATCGCT 1198
Query 1196 TCAGTGCTGTGAGAGGAGCACACAAAAATCTAAAACGGGCAGAAAAAGCTAGGAGCCTTA 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TCAGTGCTGTGAGAGGAGCACACAAAAATCTAAAACGGGCAGAAAAAGCTAGGAGCCTTA 1258
Query 1256 TCAGCAAAATTCCTG 1270
|||||||||||||||
Sbjct 1259 TCAGCAAAATTCCTG 1273
Score = 628 bits (340), Expect = 4e-179
Identities = 366/379 (97%), Gaps = 0/379 (0%)
Strand=Plus/Plus
Query 1273 ATGGTCGATGTTCTGACCACGAAAGTGAAGGCCTGGGAGAAAGAAAGAGGAGTCCCCTTC 1332
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1384 ATGGTGGATGTTCTGACCACGAAAGTGAAGGCCTGGGAGAAAGAAAGAGGGGTCCCCTTC 1443
Query 1333 TTATGTGATAAGCAACCGTTATTACAAACTCTAGAAGAAGACATTGTTATCCGTGCTCAA 1392
||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1444 TTATGCGATAAGCAACCGTTATTACAAACACTAGAAGATGACATTGTTATCCGTGCTCAA 1503
Query 1393 AGAGAAGAGGAAAAGCGTCAATTCCGAGAGCAGAAACGACTACAAGGTCAGCTTGCTACA 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 AGAGAAGAGGAAAAGCGTCAATTCCGAGAGCAGAAACGACTACAAGGTCAGCTTGCTACA 1563
Query 1453 GAGAAAGAAGCAAAGTATGGTTCAAAGTCTGCAAAGAAGAAGCAATTGGGACAGAGTCTG 1512
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1564 GAGAAAGAAGCAAAGTATGGTTCCAAGTCTGCAAAGAAGAAGCCATTGGGACAGAGTCTT 1623
Query 1513 AACACAGACAATGTGACTAAAACTCCCATTGGTCGACGCATTGGGAATACACCTGGACGT 1572
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1624 AACACAGACAATGTGACTAAAACTCCCATTGGTCGGCGCATTGGAAATACACCTGGACGT 1683
Query 1573 TCTGCTACTTCTGGCGGCAAAGATTATAGAGGCAATGCCGTGATACCATTGAACTATGTT 1632
|||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1684 TCTGTTACTTCTGGTGGCAAAGATTATAGAGGCAATGCGGTGATACCATTGAACTATGTT 1743
Query 1633 GCTCTTCAGAAAGACGATT 1651
|||||||||||||||||||
Sbjct 1744 GCTCTTCAGAAAGACGATT 1762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81676286715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5