BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901814
Length=222
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38900.2 | Symbols: | Serine protease inhibitor, potato inh... 226 7e-59
> AT2G38900.2 | Symbols: | Serine protease inhibitor, potato inhibitor
I-type family protein | chr2:16243215-16244067 FORWARD
LENGTH=513
Length=513
Score = 226 bits (122), Expect = 7e-59
Identities = 175/201 (87%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 23 ATATTGGGAAGAACTCATGGCCGGAGCTTTTGGGAACAAATGGAGACTATGCGGCGGCGG 82
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 140 ATATTGGGAAGAACTCATGGCCGGAGCTTTTAGGAACAAATGGAGACTATGCGGCTTCGG 199
Query 83 TGATAAAAGGAGAGAACTCGAGCCTTCAA-GTTAACGTGATTTTGGTTGGAACTCCGGTG 141
||||||||||||||||||||||||| ||| ||| |||| ||| || ||||| | |||
Sbjct 200 TGATAAAAGGAGAGAACTCGAGCCT-CAACGTTGTCGTGGTTTCGGATGGAAATTATGTG 258
Query 142 ACTCCGGACCTCAGGTGCGACCGCGTTAGGGTGTGGGTTAATGAAAGCCGTCTCGTCGTC 201
||| |||||||| ||| ||||||||||||| |||||| | |||| |||| |||| |||
Sbjct 259 ACTGAAGACCTCAGTTGCTACCGCGTTAGGGTTTGGGTTGACGAAATCCGTATCGTTGTC 318
Query 202 AAAAACCCAACCGCCGGCTAG 222
| |||||||||||||||||||
Sbjct 319 AGAAACCCAACCGCCGGCTAG 339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9953014302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5