BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901838
Length=1650
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39130.1 | Symbols: | Transmembrane amino acid transporter ... 2700 0.0
> AT2G39130.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr2:16322956-16327266 REVERSE LENGTH=2067
Length=2067
Score = 2700 bits (1462), Expect = 0.0
Identities = 1594/1657 (96%), Gaps = 11/1657 (1%)
Strand=Plus/Plus
Query 1 ATGAATCACGTACCTTCTGATCAAAGCTTTTACATTGAGAGCGAAGACGAAGACGATAGG 60
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 200 ATGAATCACGTACCGTCTGATCAAAGCTTTTACATTGAGAGCGAGGACGAAGACGATAGG 259
Query 61 AAAGATTACGTAGAAGAAGATGGTGGAAGCCATTCTGATTCCTC---TGATGCTTATGAT 117
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 260 AAAGATTACGTAGAAGAAGATGGTGGAAGCCATTCTGATTCCTCTGATGATGTTTATGAT 319
Query 118 GAAAACCAAGCTCAGACTAAGCCTAGCTCATACACCACTGCTTGGCCTCAGAGTTACAGG 177
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 GAAAACCAAGCTCACATTAAGCCTAGCTCATACACCACTGCTTGGCCTCAGAGTTACAGG 379
Query 178 CAGTCGATTGATCTTTACAGTAGTGTACCGTCTCCCGGTATCGGTTTTCTTGGAAATAAT 237
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 380 CAGTCGATTGATCTTTATAGTAGTGTACCGTCTCCCGGTATCGGTTTTCTTGGGAATAAT 439
Query 238 TCGATGACGAGATTCGGAAGCTCTTTCTTGTCTTCTTCTCTT-ATAAGAAGACATACTCC 296
|||||||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 440 TCGATGACGAGATTCGGAAGCTCTTTCTTGTCTTCTGGT-TTGATAAGAAGACATACTCC 498
Query 297 GGAATCATTACCTGCTGTTACAAAACCTTTGTTAGAA-ACACAAGCAGATGAACAGGCAC 355
||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| ||||
Sbjct 499 GGAATCATTACCTACTGTTACAAAACCTTTGTTAGAAGA-ACAAGCAGATGAACAAGCAC 557
Query 356 CACCAAAACATAGACTTAGCTCTCATGGCTTGCTTTCTCCTATTCCTTCGAGGAGGCATT 415
|||||||||||||||||||||||| ||||| || ||||||||||||||||||||| ||
Sbjct 558 TACCAAAACATAGACTTAGCTCTCAGGGCTTACTCTCTCCTATTCCTTCGAGGAGGGGTT 617
Query 416 CGATGCGAAAGGATGAGAAATCATCCATGGTGTCTCATGAGATTCCTATGTCTCGTAATA 475
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 618 CGATGCGAAAGGATGAGAAATCATCCATGGTGTCTCATGAGATTCCAATGTCTCGTAATA 677
Query 476 GCTCATACGGACAAGCTGTACTAAATGGATTGAACGTT-TTATGTGGGGTTGGAATACTT 534
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 678 GCTCATACGGACAAGCTGTACTAAATGGATTGAACGTTCTT-TGTGGGGTTGGAATACTT 736
Query 535 TCAACGCCTTATGCTGCAAAAGAAGGAGGATGGTTAGGACTTATGATACTATTTGTATAT 594
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 TCAACGCCTTATGCTGCCAAAGAAGGAGGATGGTTAGGACTTATGATACTATTTGTATAT 796
Query 595 GGTCTTCTTTCTTTCTACACCGGAATCCTCCTTCGTTACTGCCTCGACAGTGAGTCTGAC 654
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 797 GGTCTTCTTTCTTTCTACACCGGAATCCTCCTTCGTTATTGCCTCGACAGTGAGTCTGAC 856
Query 655 CTTGAAACCTATCCCGACATTGGCCAAGCTGCGTTTGGTACTACTGGACGTATCTTTGTC 714
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 CTCGAAACCTATCCCGACATTGGCCAAGCTGCGTTTGGTACTACTGGACGTATCTTTGTC 916
Query 715 TCGATTGTACTCTACTTGGAGCTATACGCTTGCTGTGTGGAATATATAATATTGGAGAGT 774
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 917 TCGATTGTACTCTACTTGGAGCTATACGCATGCTGTGTGGAATATATAATATTGGAGAGT 976
Query 775 GATAATTTGTCTTCATTATATCCAAATGCTGCCTTAAGTATTGGAGGGTTTCAGTTAGAT 834
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 977 GATAATTTGTCTTCATTATATCCAAATGCTGCCTTAAGTATTGGAGGATTTCAGTTAGAT 1036
Query 835 GCCCGCCATCTATTTGCATTGCTAACCACTCTCGCGGTTCTCCCCACCGTTTGGCTCAGA 894
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1037 GCACGCCATCTATTTGCATTGCTAACCACTCTCGCCGTTCTCCCCACCGTTTGGCTCAGA 1096
Query 895 GATCTCAGTGTACTGAGTTATATCTCAGCTGGAGGGGTGATTGCATCGGTGCTAGTGGTT 954
|||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1097 GATCTCAGCGTACTTAGTTATATCTCTGCTGGAGGGGTGATTGCATCAGTGCTAGTGGTT 1156
Query 955 TTGTGTTTGTTTTGGATTGGTTTGGTAGATGAAGTTGGAATTCACAGCAAAGGAACTACA 1014
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 TTATGTTTGTTTTGGATTGGTTTGGTAGATGAAGTTGGAATTCACAGCAAAGGAACTACA 1216
Query 1015 CTAAACTTGTCAACTTTACCTGTAGCTATAGGACTATATGGTTACTGCTACTCAGGACAT 1074
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1217 CTAAACTTGTCAACATTACCTGTGGCTATAGGACTCTATGGTTACTGCTACTCAGGACAT 1276
Query 1075 GCTGTTTTTCCCAACATTTATACTTCTATGGCCAAACCATCTCAATACCCTGCTGTTCTC 1134
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 GCTGTTTTCCCCAATATTTATACTTCTATGGCCAAACCATCTCAATACCCTGCTGTTCTC 1336
Query 1135 TTGACATGTTTTGGTATTTGTACTCTGATGTATGCCGGCGTCGCTGTTATGGGTTATACG 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 TTGACATGTTTTGGTATTTGTACTCTGATGTATGCCGGCGTCGCTGTTATGGGTTATACG 1396
Query 1195 ATGTTTGGAGAATCAACACAATCACAGTTTACTCTCAACTTGCCTCAAGATTTGGTTGCT 1254
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1397 ATGTTTGGAGAATCAACACAGTCACAGTTTACTCTCAACTTGCCTCAAGATTTAATTGCA 1456
Query 1255 ACTAAGATTGCCGTGTGGACTACGGTGGTCAATCCATTTACCAAATATGCTTTGACCATT 1314
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 ACTAAGATTGCTGTGTGGACTACGGTGGTCAATCCATTTACCAAATATGCTTTGACCATA 1516
Query 1315 TCTCCAGTAGCAATGAGTCTTGAGGAGTTGATACCATCAAGGCATATAAGGTCACATTGG 1374
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1517 TCTCCAGTAGCAATGAGTCTTGAGGAGTTGATACCATCAAGGCATATCAGGTCACATTGG 1576
Query 1375 TACGCCATCGGCATTAGAACCGC-ATTGGTCTTCTCTACGCTGCTTGTTGGTCTTGCAAT 1433
||||||||||||||||||||| | ||||||||||||||| |||||||||||||| || ||
Sbjct 1577 TACGCCATCGGCATTAGAACC-CTATTGGTCTTCTCTACTCTGCTTGTTGGTCTCGCTAT 1635
Query 1434 TCCCTTCTTTGGTCTTGTCATGTCATTGATTGGATCGTTGTTGACTATGCTCGTCACTCT 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1636 TCCCTTCTTTGGTCTTGTCATGTCATTGATTGGATCGTTGTTGACTATGCTCGTCACTCT 1695
Query 1494 AATACTTCCTCCAGCGTGTTTCTTGAGCATCGTACGGAGAAAAGTTACCCCGACCCAGAT 1553
||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1696 AATACTTCCTCCAGCTTGTTTCTTGAGCATTGTAAGGAGAAAAGTTACCCCGACCCAGAT 1755
Query 1554 GATGTTGTGTGTATTAATCATCATAGTAGGAGCAATATCTTCAGTCATTGGCTCATATTC 1613
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1756 GATGTTGTGTGTCTTAATCATCATAGTAGGAGCAATATCTTCAGTCATTGGCTCATATTC 1815
Query 1614 AGCTCTCTCCAAGATCGTTGAGAAATTGAGCAGCTGA 1650
|||||| |||||||||||||||||||||| || ||||
Sbjct 1816 AGCTCTTTCCAAGATCGTTGAGAAATTGACCAACTGA 1852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81525685080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5