BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901854
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39290.1 | Symbols: PGPS1, PGP1, PGS1 | phosphatidylglycerol... 1513 0.0
AT3G55030.1 | Symbols: PGPS2 | phosphatidylglycerolphosphate sy... 608 3e-173
> AT2G39290.1 | Symbols: PGPS1, PGP1, PGS1 | phosphatidylglycerolphosphate
synthase 1 | chr2:16407239-16409123 FORWARD LENGTH=1209
Length=1209
Score = 1513 bits (819), Expect = 0.0
Identities = 867/891 (97%), Gaps = 0/891 (0%)
Strand=Plus/Plus
Query 1 ATGCTCAGATCCGGTCTCGCTTCGTTAATCGTCGATGTCAATTTGCGGCGCACGTTACGT 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 36 ATGCTCAGATCCGGTCTGGCTTCGTTAATCGTCGATGTCAATTTGCGGCGCACGTTACGT 95
Query 61 CCATCTCCAACCTTTTCTTTTCCGGCGCATCTTAGCCGCTGCATTATCACTTCCCGTTAC 120
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 96 CCATCCCCAACCTTTTCTTTTCCGGCGCATCTTAGCCGTTGCATTATCACTTCCCGTTAC 155
Query 121 TCCTCCCGTACAGCTCTAAGGTTTCCAATTCGAATATCTCGCCACCACCACCGCCTTTCC 180
|||||||||||| ||||||||||||| |||| ||||||||||||||| ||||| || |||
Sbjct 156 TCCTCCCGTACATCTCTAAGGTTTCCGATTCAAATATCTCGCCACCAACACCGTCTATCC 215
Query 181 TGCTTTTCTTCATCCTCTTCGTCGGAGCAAGGCAGACCAACTTCCTCTTCCCGAAACAGT 240
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 216 TACTTTTCTTCATCCTCTTCGTCGGAGCAAAGCAGACCAACTTCCTCTTCCCGAAACAGT 275
Query 241 TTCAGTGGTCACGGTCAGCTTGATGGTGACGACAATTCTTCACCGCCTCCGTCGCAATCA 300
|||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct 276 TTCAGTGGTCACGGTCAGCTTGATAGTGATGATAATTCTTCACCGCCTCCGTCGCAATCA 335
Query 301 TCTTCCAAAGTTCTTACATTACCCACCGTATTAACACTTGGTCGTGTCGCCGCCGTCCCG 360
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 336 TCTTCCAAAGTTCTTACATTGCCTACCGTATTAACACTTGGTCGTGTCGCCGCCGTCCCG 395
Query 361 CTTCTCGTCGCAACCTTTTACGTTGATAGTTGGTGGGGAACAACTGCTACAACAAGCATT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 CTTCTCGTCGCAACCTTTTACGTTGATAGTTGGTGGGGAACAACTGCTACAACAAGCATT 455
Query 421 TTCATTGCAGCAGCCATTACAGACTGGCTTGACGGCTATCTTGCCCGCAAGATGAGGTTA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 TTCATTGCAGCAGCCATTACAGACTGGCTTGACGGCTATCTTGCCCGCAAGATGAGGTTA 515
Query 481 GGTTCTGCGTTTGGTGCCTTTTTGGATCCAGTTGCAGATAAGCTTATGGTCGCAGCTACA 540
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 516 GGTTCTGCGTTTGGTGCCTTTTTGGATCCAGTTGCTGATAAGCTTATGGTTGCAGCTACA 575
Query 541 TTGATCTTACTGTGTACAAAACCTATCGAAGTTGCTGAATTAGGACCAGTTCCATGGTTA 600
||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 576 TTGATTTTACTGTGTACAAAACCTATCCAAGTTGCTGAATTAGGACCACTTCCATGGTTA 635
Query 601 TTGACCGTACCTTCTATTGCAATCATTGGTAGAGAGATTACTATGTCAGCAGTAAGAGAA 660
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 636 TTGACCGTACCTTCTATTGCAATCATTGGTAGGGAGATTACTATGTCCGCAGTAAGAGAA 695
Query 661 TGGGCTGCATCTCAAAATGGAAAGCTTTTAGAGGCAGTTGCTGTAAATAACTTGGGCAAG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 TGGGCTGCATCTCAAAATGGAAAGCTTTTAGAGGCAGTTGCTGTAAATAACTTGGGCAAG 755
Query 721 TGGAAAACCGCCACGCAGATGACAGCACTAACCATACTTCTTGCAAGCCGAGATAGCAAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 TGGAAAACCGCCACGCAGATGACAGCACTAACCATACTTCTTGCAAGCCGAGATAGCAAT 815
Query 781 GTTGGATGGCTCGTAGCTTCAGGTGCTGGCTTGCTTTATGTATCAGCAGGACTATCGGTT 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 816 GTTGGATGGCTCGTAGCTTCAGGTGCTGGCTTGCTTTATGTATCAGCAGGACTATCTGTT 875
Query 841 TGGTCTTTAGCCGTTTATATGAGGAAGATATGGAAAGTACTAATGAAGTAG 891
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 TGGTCTTTAGCCGTTTATATGAGGAAGATATGGAAAGTACTAATGAAGTAG 926
> AT3G55030.1 | Symbols: PGPS2 | phosphatidylglycerolphosphate
synthase 2 | chr3:20396760-20398653 FORWARD LENGTH=1231
Length=1231
Score = 608 bits (329), Expect = 3e-173
Identities = 498/582 (86%), Gaps = 2/582 (0%)
Strand=Plus/Plus
Query 301 TCTTCCAAAGTTCTTACATTACCCACCGTATTAACACTTGGTCGTGTCGCCGCCGTCCCG 360
||||| ||||| ||||||| || ||||||||||| ||||| ||||| || ||||| |||
Sbjct 209 TCTTCTAAAGTGATTACATTGCCTACCGTATTAACCCTTGGCCGTGTAGCTGCCGTTCCG 268
Query 361 CTTCTCGTCGCAACCTTTTACGTTGATAGTTGGTGGGGAACAACTGCTACAACAAGCATT 420
|||||||||| ||||||||||||||| | |||||||||| ||||||||| ||||| |||
Sbjct 269 ATTCTCGTCGCCACCTTTTACGTTGATTGCTGGTGGGGAAGAACTGCTACGACAAGTATT 328
Query 421 TTCATTGCAGCAGCCATTACAGACTGGCTTGACGGCTATCTTGCCCGCAAGATGAGGTTA 480
||||||||||||||||||||||| |||||||| || ||| |||| || |||||||| ||
Sbjct 329 TTCATTGCAGCAGCCATTACAGATTGGCTTGATGGATATATTGCACGGAAGATGAGATTG 388
Query 481 GGTTCTGCGTTTGGTGCCTTTTTGGATCCAGTTGCAGATAAGCTTATGGTCGCAGCTACA 540
||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 389 GGTTCTGAATTTGGTGCATTTTTGGATCCAGTGGCAGATAAGCTTATGGTAGCAGCTACA 448
Query 541 TTGATCTTACTGTGTACAAAACCTATCGAAGTTGCTGAATTAGGACCAGTTCCATGGTTA 600
||||| || |||| || ||||| || | | | || |||||||||||||||||||||
Sbjct 449 TTGATATTGTTGTGCACTAAACCAATGGTCGCCGTTGTCTTAGGACCAGTTCCATGGTTA 508
Query 601 TTGACCGTACCTTCTATTGCAATCATTGGTAGAGAGATTACTATGTCAGCAGTAAGAGAA 660
|||| |||||||| || || |||||||||||||||||||||||||| ||||||||||||
Sbjct 509 GTGACAGTACCTTCAATCGCCATCATTGGTAGAGAGATTACTATGTCTGCAGTAAGAGAA 568
Query 661 TGGGCTGCATCTCAAAATGGAAAGCTTTTAGAGGCAGTTGCTGTAAATAACTTGGGCAAG 720
||||||||||||||||| || ||||||| |||||| ||||||||||||| |||||| |||
Sbjct 569 TGGGCTGCATCTCAAAACGGCAAGCTTTCAGAGGCTGTTGCTGTAAATAGCTTGGGAAAG 628
Query 721 TGGAAAACCGCCACGCAGATGACAGCACTAACCATACTTCTTGCAAGCCGAGATAGCAAT 780
|||||||| || |||||||||| ||| ||||||||||||||||||||||| ||||||| |
Sbjct 629 TGGAAAACTGCAACGCAGATGATAGCGCTAACCATACTTCTTGCAAGCCGGGATAGCAGT 688
Query 781 GTTG-GATGGCTCGTAGCTTCAGGTGCTGGCTTGCTTTATGTATCAGCAGGACTATCGGT 839
||| || | || || | || ||| ||| ||||| |||||||| ||||| || || |
Sbjct 689 TTTGAGA-GACTATTACCGTCGGGTATTGGGTTGCTCTATGTATCTGCAGGGCTCTCTAT 747
Query 840 TTGGTCTTTAGCCGTTTATATGAGGAAGATATGGAAAGTACT 881
|||||||||| |||||||||||||||||||||| ||||||
Sbjct 748 ATGGTCTTTAGTTGTTTATATGAGGAAGATATGGAGAGTACT 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43502771302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5