BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901868
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39410.2 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1496 0.0
> AT2G39410.2 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr2:16455569-16458217 FORWARD LENGTH=1052
Length=1052
Score = 1496 bits (810), Expect = 0.0
Identities = 907/955 (95%), Gaps = 2/955 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAGTGAAACAGAGGACATCAAGTACGAAGAGAGTTTCATAAAGAACACTCGAGGA 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 ATGGCGATTGAAACAGAGGACATCAAGTACGAAGAGAGTTTCATAAAGAACACTCGAGGA 158
Query 61 TTTAAGTTGTTCACGTGCAGATGGATACCAGCAAACCA-AGAGCCAAGGGCTTTAGTTTT 119
|||||||||||||| ||||||||| ||||| |||| || |||||||||||||||||||||
Sbjct 159 TTTAAGTTGTTCACATGCAGATGGCTACCAACAAA-CAGAGAGCCAAGGGCTTTAGTTTT 217
Query 120 CCTTTGCCATGGATATGGCATGGAATGCAGCGTCACCATGAATAGTACTGCAAGGAGGAT 179
|||||||||||||||||||||||||||||| ||||||||||||||||||| || ||| |
Sbjct 218 CCTTTGCCATGGATATGGCATGGAATGCAGTATCACCATGAATAGTACTGCTAGAAGGCT 277
Query 180 CGTGAAGGCAGGATTTGCAGTATATGGAATGGATTATGAAGGACATGGCAAATCTGATGG 239
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 278 TGTGAAGGCAGGATTTGCGGTATATGGAATGGATTATGAAGGACATGGAAAATCTGATGG 337
Query 240 GCTTAGTGCTTATATCCCAAACTTTGACCACCTCGTTGATGATGTCTCCACTCACTACAC 299
|||||| ||||||||| |||||||||| | || |||||||||||||| |||||||||||
Sbjct 338 GCTTAGCGCTTATATCTCAAACTTTGATCGTCTTGTTGATGATGTCTCAACTCACTACAC 397
Query 300 AACTATTTGCGAGAGAGAAGAGAACAAATGGAAGATGAGGTTTCTGTTAGGAGAGTCAAT 359
| ||||||||||||| ||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 398 AGCTATTTGCGAGAGGGAAGAAAACAAGTGGAAGATGAGGTTTATGTTAGGAGAGTCAAT 457
Query 360 GGGAGGAGCAGTGGTTTTGTTGCTACGCAGGAAGAACCCTGACTTTTGGGATGGAGCTAT 419
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 458 GGGAGGAGCAGTTGTTTTGTTGCTAGGCAGGAAGAACCCTGACTTTTGGGATGGAGCTAT 517
Query 420 CTTGGTCGCTCCAATGTGTAAGATCGCAGAAGAAATGAAGCCAAGTCCTTTTGTTATTTC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 CTTGGTCGCTCCAATGTGTAAGATCGCAGAAGAAATGAAGCCAAGTCCTTTTGTTATTTC 577
Query 480 GATATTAACAAAGCTTATCTCCATTATACCCAAATGGAAAATCATTCCTAGTCAAGATAT 539
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 578 GATATTAACAAAGCTTATTTCGATTATACCCAAATGGAAAATCATTCCTAGTCAAGATAT 637
Query 540 CATCGAGATTTCATATAAAGAGCCAGAAATAAGAAAACAGGTTAGAGAAAATCCGTTATG 599
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 638 CATCGAGATTTCATATAAAGAGCCAGAAATTAGAAAACAGGTTAGAGAAAATCCTTTATG 697
Query 600 CTCCAAAGGACGACCACGCTTGAAAACTGCGTATGAGCTCTTAAGGATCAGCAACGACTT 659
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 CTCGAAAGGACGACCACGCTTGAAAACTGCGTATGAGCTCTTAAGGATCAGCAACGACTT 757
Query 660 GGAGAAGTCACTTAAAGAGGTTTCATTGCCGTTTATGGTATTACACGGAGGTGATGATAA 719
||||||| |||| |||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 758 GGAGAAGAGACTTCAAGAGGTTTCATTGCCGTTTTTGGTATTACACGGAGATGATGATAA 817
Query 720 AGTAACAGATAAAGCAGTGAGCCAAGAACTGTACAAGGTTGCGTTGAGCGCTGACAAGAC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 AGTAACAGATAAAGCAGTGAGCCAAGAACTGTACAAGGTTGCGTTGAGCGCTGACAAGAC 877
Query 780 CTTAAAGTTGTACCCTGGGATGTGGCACGGTTTGCTCAACGGCGAGACACCAGAGAACAT 839
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 878 CTTAAAGTTGTACCCTGGGATGTGGCACGGTTTGCTCACCGGCGAGACACCAGAGAACAT 937
Query 840 TGAAATTGTCTTTGCCGACGTCATCGGATGGTTGGAAAAAAGAAGTGATTATGGAAATGA 899
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 938 CGAAATTGTCTTTGCCGACGTCATCAGTTGGTTGGAAAAAAGAAGTGATTATGGAAATGA 997
Query 900 TAGGTTTGAGTCGGAGCTTAAACAGAATAATGATGGTTTTAATTTCAAGGAATAG 954
|||||||||||| |||||||||||| ||||||| |||| ||||||||| |||||
Sbjct 998 TAGGTTTGAGTCAGAGCTTAAACAGCGTAATGATCGTTTAAATTTCAAGAAATAG 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5