BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg901888

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G39590.1 | Symbols:  | Ribosomal protein S8 family protein |...   686    0.0  


> AT2G39590.1 | Symbols:  | Ribosomal protein S8 family protein 
| chr2:16517588-16518265 REVERSE LENGTH=411
Length=411

 Score =  686 bits (371),  Expect = 0.0
 Identities = 397/410 (97%), Gaps = 0/410 (0%)
 Strand=Plus/Plus

Query  1    ATGTGTGTAGAGGCGATAATGGTGAGGGCTAGCGTCTTAAACGATTGTCTTAAGAGCATG  60
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  1    ATGTGTGTAGAGGCGATAATGGTGAGGGCTAGCGTCTTAAACGATTGTCTCAAGAGCATG  60

Query  61   AGTAATGCAGAGAAACGAGGGAAACGCCAAGTCATGATCAGGCCATCTTCTAAAGTGATC  120
            |||||||||||||||| ||||||||||||||||||||| || |||||||| |||||||||
Sbjct  61   AGTAATGCAGAGAAACAAGGGAAACGCCAAGTCATGATAAGACCATCTTCCAAAGTGATC  120

Query  121  ATTAAGTTTCTCACTGTGATGCAAAAGCATGGTTACATTGCAGAGTTTGAATATGTGGAT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ATTAAGTTTCTCACTGTGATGCAAAAGCATGGTTACATTGCAGAGTTTGAATATGTGGAT  180

Query  181  GATCACAGATCCGGTAAGATTGTGGTTGAGCTTAATGGAAGGCTTAACAACTGCGGTGTT  240
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GATCACAGATCCGGGAAGATTGTGGTTGAGCTTAATGGAAGGCTTAACAACTGCGGTGTT  240

Query  241  ATTAGTCCTCGATATGATGTTGTCGTCACGGAAATCGAAGGTTGGACTGCTAAATTACTC  300
            |||||||||||||||||  ||| ||||| |||||| |||||||||||||||||||| |||
Sbjct  241  ATTAGTCCTCGATATGACCTTGGCGTCAAGGAAATTGAAGGTTGGACTGCTAAATTGCTC  300

Query  301  CCTTCAAGACAGTTTGGGTACATTGTCCTGACAACATCAGCTGGAATCATGGACCATGAA  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CCTTCAAGACAGTTTGGGTACATTGTCCTGACAACATCAGCTGGAATCATGGACCATGAA  360

Query  361  GAGGCTAGGAAGAAAAATGTTGGGGGTAAAGTGCTTGGTTTTTTCTACTA  410
            |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  361  GAGGCTAGGAAGAAAAATGTTGGGGGCAAAGTGCTTGGTTTTTTCTACTA  410



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19453618863


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5