BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg901916 Length=741 Score E Sequences producing significant alignments: (Bits) Value AT2G39820.1 | Symbols: | Translation initiation factor IF6 | c... 1195 0.0 > AT2G39820.1 | Symbols: | Translation initiation factor IF6 | chr2:16618277-16619689 FORWARD LENGTH=884 Length=884 Score = 1195 bits (647), Expect = 0.0 Identities = 706/735 (96%), Gaps = 2/735 (0%) Strand=Plus/Plus Query 8 GTCTTCAATATGATAACAATAATTGCGAAATTGGTGTATTTTCCAAACTCACAAATGCTT 67 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 54 GTCTTCAATATGATAACAATAATTGCGAAATTGGTGTCTTTTCCAAACTCACAAATGCTT 113 Query 68 ATTGTCTCGTTTCCGCAACATCTGCCTCCGCAAATTTATTCACTGGTTATGAGTCGAAGT 127 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 114 ATTGTCTCGTTTCCGCAACATCTGCCTCCGCAAACTTCTTCACTGGTTATGAGTCGAAGT 173 Query 128 TAAAAGGTGTTATCCCAATTGTTACTACTTCCATAGGAGGATCTGGTACTATAGGTAGTC 187 ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| Sbjct 174 TAAAAGGTGTTATCCCAATTGTTACTACTTCCATAGGAGGATCAGGGACTATTGGTAGTC 233 Query 188 TATGTGTTGGAAACAAAAACGGGCTTCTTCTGTCTCACACCATTACAGACCAAGAGCTTC 247 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 234 TATGTGTCGGAAACAAAAACGGACTTCTTCTGTCTCACACCATTACAGACCAAGAGCTTC 293 Query 248 AACATTTGAGAGATAGTTTGCCTGATGAAGTTGTAGTCCAACGAATTGAGGAACCTATAT 307 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 294 AACATTTGAGAGATAGTTTGCCTGATGAAGTTGTAGTCCAACGAATTGAAGAACCTATAT 353 Query 308 GTGCACTTGGAAACGCTATAGCTTGCAATGACTATGTCGCGCTTGTGCATCCAAAGCTTG 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 354 GTGCACTTGGAAACGCTATAGCTTGCAATGACTATGTCGCGCTTGTGCATCCAAAGCTCG 413 Query 368 AGAACA-ACACCGAAGAGATAATAAGTGATGTTCTTGGTGTTGAAGTTTATCGCCAAACC 426 |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 414 AGAA-AGACACCGAAGAGATAATAAGTGATGTTCTTGGTGTTGAAGTTTATCGCCAAACC 472 Query 427 ATTGCGAATAACGAACTTGTGGGAAGTTATTGTTCTTTATCCAATAATGGTGGAATGGTT 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 473 ATTGCGAATAACGAACTTGTGGGAAGTTATTGTTCTTTATCCAATAATGGTGGAATGGTT 532 Query 487 CATTCAAATACGAAAGTGGAAGAAATGGTCGAACTAGCGAATCTTCTTCAGGTGCCTTTG 546 || |||||||| || ||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 533 CACTCAAATACCAACGTGGAAGAAATGGTCGAGCTAGCGAATCTTGTTCAGGTGCCTTTG 592 Query 547 GTTGCAGGAACCATGAACCGTGGAAGCCAAGTGATATCCGCTGGTTTGACTGTGAACGAT 606 |||||||||||| |||||||||| |||||||| |||||||| |||||||||||||||||| Sbjct 593 GTTGCAGGAACCGTGAACCGTGGCAGCCAAGTTATATCCGCGGGTTTGACTGTGAACGAT 652 Query 607 TGGACCGCTTTCTGTGGGTCAGACACAACTGCAGTAGAGCTCTCTGTTGTTAACGGTATC 666 ||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||| Sbjct 653 TGGACCGCTTTCTGTGGGTCAGATACTACTGCAGTAGAGCTCTCTGTTGTTAACAATATC 712 Query 667 TTCAAACTAGTCCAATCTCAGCCCGATTTTGTCGTTAGTGAGATGAGGAAGTCTTTGATC 726 ||||||||||||||||||||||| ||||| |||| |||||| |||||||||||||||||| Sbjct 713 TTCAAACTAGTCCAATCTCAGCCTGATTTCGTCGGTAGTGAAATGAGGAAGTCTTTGATC 772 Query 727 GATACCTATGTCTAA 741 ||||||||||||||| Sbjct 773 GATACCTATGTCTAA 787 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35967649252 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5