BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901916
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39820.1 | Symbols: | Translation initiation factor IF6 | c... 1195 0.0
> AT2G39820.1 | Symbols: | Translation initiation factor IF6 |
chr2:16618277-16619689 FORWARD LENGTH=884
Length=884
Score = 1195 bits (647), Expect = 0.0
Identities = 706/735 (96%), Gaps = 2/735 (0%)
Strand=Plus/Plus
Query 8 GTCTTCAATATGATAACAATAATTGCGAAATTGGTGTATTTTCCAAACTCACAAATGCTT 67
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 54 GTCTTCAATATGATAACAATAATTGCGAAATTGGTGTCTTTTCCAAACTCACAAATGCTT 113
Query 68 ATTGTCTCGTTTCCGCAACATCTGCCTCCGCAAATTTATTCACTGGTTATGAGTCGAAGT 127
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 114 ATTGTCTCGTTTCCGCAACATCTGCCTCCGCAAACTTCTTCACTGGTTATGAGTCGAAGT 173
Query 128 TAAAAGGTGTTATCCCAATTGTTACTACTTCCATAGGAGGATCTGGTACTATAGGTAGTC 187
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 174 TAAAAGGTGTTATCCCAATTGTTACTACTTCCATAGGAGGATCAGGGACTATTGGTAGTC 233
Query 188 TATGTGTTGGAAACAAAAACGGGCTTCTTCTGTCTCACACCATTACAGACCAAGAGCTTC 247
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 234 TATGTGTCGGAAACAAAAACGGACTTCTTCTGTCTCACACCATTACAGACCAAGAGCTTC 293
Query 248 AACATTTGAGAGATAGTTTGCCTGATGAAGTTGTAGTCCAACGAATTGAGGAACCTATAT 307
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 294 AACATTTGAGAGATAGTTTGCCTGATGAAGTTGTAGTCCAACGAATTGAAGAACCTATAT 353
Query 308 GTGCACTTGGAAACGCTATAGCTTGCAATGACTATGTCGCGCTTGTGCATCCAAAGCTTG 367
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 354 GTGCACTTGGAAACGCTATAGCTTGCAATGACTATGTCGCGCTTGTGCATCCAAAGCTCG 413
Query 368 AGAACA-ACACCGAAGAGATAATAAGTGATGTTCTTGGTGTTGAAGTTTATCGCCAAACC 426
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 AGAA-AGACACCGAAGAGATAATAAGTGATGTTCTTGGTGTTGAAGTTTATCGCCAAACC 472
Query 427 ATTGCGAATAACGAACTTGTGGGAAGTTATTGTTCTTTATCCAATAATGGTGGAATGGTT 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 ATTGCGAATAACGAACTTGTGGGAAGTTATTGTTCTTTATCCAATAATGGTGGAATGGTT 532
Query 487 CATTCAAATACGAAAGTGGAAGAAATGGTCGAACTAGCGAATCTTCTTCAGGTGCCTTTG 546
|| |||||||| || ||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 533 CACTCAAATACCAACGTGGAAGAAATGGTCGAGCTAGCGAATCTTGTTCAGGTGCCTTTG 592
Query 547 GTTGCAGGAACCATGAACCGTGGAAGCCAAGTGATATCCGCTGGTTTGACTGTGAACGAT 606
|||||||||||| |||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 593 GTTGCAGGAACCGTGAACCGTGGCAGCCAAGTTATATCCGCGGGTTTGACTGTGAACGAT 652
Query 607 TGGACCGCTTTCTGTGGGTCAGACACAACTGCAGTAGAGCTCTCTGTTGTTAACGGTATC 666
||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||
Sbjct 653 TGGACCGCTTTCTGTGGGTCAGATACTACTGCAGTAGAGCTCTCTGTTGTTAACAATATC 712
Query 667 TTCAAACTAGTCCAATCTCAGCCCGATTTTGTCGTTAGTGAGATGAGGAAGTCTTTGATC 726
||||||||||||||||||||||| ||||| |||| |||||| ||||||||||||||||||
Sbjct 713 TTCAAACTAGTCCAATCTCAGCCTGATTTCGTCGGTAGTGAAATGAGGAAGTCTTTGATC 772
Query 727 GATACCTATGTCTAA 741
|||||||||||||||
Sbjct 773 GATACCTATGTCTAA 787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35967649252
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5