BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901922
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39880.1 | Symbols: MYB25, AtMYB25 | myb domain protein 25 |... 1210 0.0
> AT2G39880.1 | Symbols: MYB25, AtMYB25 | myb domain protein 25
| chr2:16647945-16649479 REVERSE LENGTH=1104
Length=1104
Score = 1210 bits (655), Expect = 0.0
Identities = 1004/1161 (86%), Gaps = 69/1161 (6%)
Strand=Plus/Plus
Query 1 ATGAACTCAGAAATCTCTCAG-CCGCCGGAGCTAATGCCGTCGCTGAATCCGTTTAGTGG 59
|||||| ||||||||||| | |||||||||||||| |||| | |||||| || |
Sbjct 1 ATGAACGGAGAAATCTCTC-GTCCGCCGGAGCTAATATCGTCCCGGAATCC--TT-G-CA 55
Query 60 TGTTGATATCTCGGAAGATACAATAAACGCTGCAGTCGAGGCAGAGCTCGCCGAGTTAGC 119
| | | | | ||| || ||||| || ||||| |||||||||||||||||| ||||
Sbjct 56 AG-AG-T-T-T-TGAAAATGCAATACACAAAGCAGTTGAGGCAGAGCTCGCCGAGCTAGC 110
Query 120 GAAAAGTGACTCGAACGGCGGAGGAAAGAGTAAAGTGAAAGGATCTTGGTCT-CCGGAGC 178
|||||| ||| |||||||||| ||||||||||||||||||||| |||||| | |||||||
Sbjct 111 GAAAAGCGACGCGAACGGCGGCGGAAAGAGTAAAGTGAAAGGACCTTGGT-TGCCGGAGC 169
Query 179 AAGATGAGGCTCTCACGAGGCTTGTGAAAAAGTGTGGGCCGAGAAATTGGACTCTGATGT 238
|||||||||||||||||||||||||||||| |||||||||||| || |||| ||| || |
Sbjct 170 AAGATGAGGCTCTCACGAGGCTTGTGAAAATGTGTGGGCCGAGGAACTGGAATCTAATCT 229
Query 239 CTCGTGGAATCCCAGGTCGTTCTGGTAAATCTTGCCGATTGCGTTGGTGTAATCAGCTCG 298
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 230 CCCGTGGAATCCCAGGTCGCTCTGGTAAATCTTGCCGATTACGTTGGTGTAATCAGCTCG 289
Query 299 ATCCTAACCTCAAACGAAAACCTTTCTCTGATGAGGAGGATCATATGATAATGTCTGCAC 358
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 290 ATCCTATCCTCAAACGAAAACCTTTCTCTGATGAGGAGGAGCATATGATAATGTCTGCAC 349
Query 359 ACGCGGTTCTTGGGAACAAATGGGCTGTGATTGCTAAACTCTTACCAGGGAGAACAGACA 418
| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
Sbjct 350 AGGCGGTTCTTGGGAACAAATGGTCTGTGATTGCTAAACTCTTACCTGGGAGAACAGATA 409
Query 419 ATGCCATTAAGAATCATTGGAACTC-AAGTCTTAGACGTAAACCAGCAGATCTGTGGAAG 477
||||||||||||||||||||||||| || ||||||||||||||||||||| | ||||||
Sbjct 410 ATGCCATTAAGAATCATTGGAACTCTAA-TCTTAGACGTAAACCAGCAGAACAATGGAAG 468
Query 478 GTTCCTCTATTGATGTCTTATACAGAAGAAA-TATATCAAATGCATCCATCAAAGGTCAG 536
||||||||||||||||| ||||||| || | |||||||| || ||||||||| ||||||
Sbjct 469 ATTCCTCTATTGATGTCTAATACAGA-GATAGTATATCAACTGTATCCATCAATGGTCAG 527
Query 537 AAAGATATCAAATGCATCCACTAAAGAGGAGCATCTACCTC--GA-GAAGAAACCGATTT 593
|| ||||||||| |||||| | ||||| | |||||||||| || |||||||||| | |
Sbjct 528 AAGGATATCAAACGCATCCCCCAAAGA--A-CATCTACCTCAAGAAGAAGAAACCGGTGT 584
Query 594 GGTTACGCCTCCCGTATTAAATG-ATGA--A-GCAAACGAGCCTCCTCGGGAACAAAAGA 649
||| | | | || ||||| |||| | ||||| |||||||||||||| ||||| |
Sbjct 585 A-TTAAG--TGATG-ATAAAATGGATGATGAAGCAAAGGAGCCTCCTCGGGAGCAAAATA 640
Query 650 GTAAACCTGATATTTATCGCCCAGTGGCTCGAATTGGTGCTTTCAGTGTCTGTAAACCAG 709
||||| ||| | ||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 641 GTAAAACTGGTGTTTATCGTCCAGTGGCTCGAATGGGTGCTTTCAGTGTCTGTAAACCAG 700
Query 710 GATACATGAACGACCATATGGCTCCATGTGAGGGATCTTTAGTTCAAGCATCAAGACCTG 769
|||||||| | | | | | |||||||||| |||| |||||||||||||||||||
Sbjct 701 GATACATG---G-C--T----C-C-ATGTGAGGGACCTTTGGTTCAAGCATCAAGACCTG 748
Query 770 ACTCATTGGCTGGTAAATATCTTCAGTCTCTTTGTTATGATCCTATCATCCCTTCAAAAT 829
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 749 ACTCATTGGCTGGTAAATTTCTTCAGTCTCTTTGTTATGATCCTATTATCCCTTCAAAAT 808
Query 830 GCGGTCACGGTTGCTGCAACCATCAAGACAACAAAACGA-TGTCATCATCGTGTAACTCG 888
|||||||||||||||||||||||||||||| || ||| | |||||||||||| | |
Sbjct 809 GCGGTCACGGTTGCTGCAACCATCAAGACAGCACAAC-ACTGTCATCATCGT----C--G 861
Query 889 GTGCTGGGACCAGAGTTTGTGGATTATGAGGAACGTTCTTCTGCAGAGTTAGACCAAGAA 948
||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 862 GTGCTGGGATCAGAGTTTGTGGATTATGAGGAACATTCTTCTGCAGAGTTAGATAAAGAA 921
Query 949 TTGATCTCTATATCAACCGACCTGAACAATATTGCTTGGACTAGGAGTGGGATTAACAAC 1008
|||||||||||||||| ||||||||||||| |||||||| ||||||||||| |
Sbjct 922 TTGATCTCTATATCAAATGACCTGAACAATACTGCTTGGATTAGGAGTGGGA--A----- 974
Query 1009 AACTATTTTAAGGAAGCTGAACCGAGTTTGAAGGCTGATGATCAGTTTCATCGTGAATAT 1068
||||||||||| |||||||||||||||||||||||||| |||||| |||
Sbjct 975 -----------GGAAGCTGAACAGAGTTTGAAGGCTGATGATCAGTTTCGTCGTGAGTAT 1023
Query 1069 GCTCAGGCGAAATTTACTGGAATGGTAAACAATGGTGTATCAAGTCAGATGCTGAGACAA 1128
||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1024 GCTCACTCGAAATTTAGTGGAATGGTAAACAATGGTGTATCAAGTCAGATGGTGAGACAA 1083
Query 1129 GATTTAAGGGCTTTGAGCTAA 1149
|||||||||||||||||||||
Sbjct 1084 GATTTAAGGGCTTTGAGCTAA 1104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56375212035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5