BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901965
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40180.1 | Symbols: ATHPP2C5, PP2C5 | phosphatase 2C5 | chr2... 1840 0.0
> AT2G40180.1 | Symbols: ATHPP2C5, PP2C5 | phosphatase 2C5 | chr2:16782522-16784147
FORWARD LENGTH=1306
Length=1306
Score = 1840 bits (996), Expect = 0.0
Identities = 1122/1182 (95%), Gaps = 12/1182 (1%)
Strand=Plus/Plus
Query 1 ATGCAACTCTCCAAGAATCCGATCAAACAAACGAGAAATCGAGAGAAGAAACACACCGAC 60
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGCAACTCTCAAAGAATCCGATCAAACAAACGAGAAATCGAGAGAAGAATTACACCGAC 60
Query 61 GATTTCGCGATGAAGAGATCTGTAATCATGGCTCCGGAATCTCCTGtttttttCCCACCT 120
|||||| | |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 61 GATTTCACCATGAAGAGATCTGTAATCATGGCTCCTGAATCTCCGGTTTTTTTCCCACCT 120
Query 121 CCGCTTGTTTTCTCTCCGACGTCGGTAAAAACGCCGTTGTCTTCTCCTCGTTCGGCGCCA 180
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 121 CCGCTTGTTTTCTCTCCGACGTCGGTCAAAACGCCGTTGTCTTCTCCTCGTTCGTCGCCA 180
Query 181 CCGAAGCTGACGATGGTTGCTTGTCCTCCAAGAAAGCCAAGGGAGAC-AACAACTAAGGG 239
|||||||||||||||||||||||||||||||||||||||| |||||| || |||| |||
Sbjct 181 CCGAAGCTGACGATGGTTGCTTGTCCTCCAAGAAAGCCAAAGGAGACGAA-GACTACGGG 239
Query 240 TTCTGGTTCGGATTCCGAAACGGTGTTGAAAAGAAAACGACCGCCGATGCTTGACTTAAC 299
||| | ||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 240 TTC----T--GATTCTGAAACGGTGTTGAAAAGGAAACGACCACCGATGCTTGACTTAAC 293
Query 300 GGCGGCTCCGATGGTTGCATCGTGGTGTAGTACGACGAGAGAGACGGCGGAGAAAGGAGC 359
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 294 GGCGGCTCCGACGGTTGCATCGTGGTGCAGTACGACGAGAGAGACGGCGGAGAAAGGAGC 353
Query 360 GGAGGTTGTTGAAGAAGAGGAAGATGGATACTACTCTGTTTATTGTAAGAGAGGAAGACG 419
||| |||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 354 GGAAGTTGTTGAAGCAGAAGAAGATGGATACTACTCTGTTTATTGCAAGAGAGGAAGACG 413
Query 420 CGGACCAATGGAAGATAGGTACTTCGCGGCGGTTGATCGTAAAGACGACGGAGCTGTTA- 478
||||||||||||||||||||| |||||||| ||||||||||| |||||||||| ||||
Sbjct 414 CGGACCAATGGAAGATAGGTATTTCGCGGCCGTTGATCGTAACGACGACGGAG--GTTAC 471
Query 479 AAAAA-GCTTTCTTTGGGGTATTTGATGGTCACGGCGGATCCAAGGCGGCGGAATTCGCT 537
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 AAAAATGCTTTCTTTGGGGTATTTGATGGTCACGGCGGATCCAAGGCGGCGGAATTCGCT 531
Query 538 GCGATGAATCTAGGAAACAATATCGAGGCGGCGATGGCATCGGCAAGATCAGGAGAAGAA 597
|||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 532 GCGATGAATCTAGGGAACAATATCGAGGCGGCAATGGCATCGGCGAGATCAGGAGAAGAT 591
Query 598 GGTTGCTCGATGGAGAGAGCGATAAGAGAAGGTTATATCAAAACGGATGAGGATTTCTTG 657
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GGTTGTTCGATGGAGAGTGCGATAAGAGAAGGTTATATCAAAACGGATGAGGATTTCTTG 651
Query 658 AAAGAAGGTTCGAGAGGCGGCGCGTGTTGTGTAACCGCTCTGATATCGAAAGGCGAGCTT 717
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 652 AAAGAAGGTTCGAGAGGTGGCGCGTGTTGTGTAACCGCTTTGATATCGAAAGGCGAGCTT 711
Query 718 GCGGTTTCAAATGCAGGAGACTGCCGGGCTGTTATGAGTCGTGGTGGAACGGCGGAAGCT 777
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 712 GCGGTTTCGAATGCAGGCGACTGCCGGGCTGTTATGAGTCGTGGTGGAACCGCGGAAGCT 771
Query 778 CTCACTTCCGATCATAATCCTTCTCAAGCAAATGAGCTCAAAAGGATTGAAGCATTGGGT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 CTCACTTCCGATCATAATCCTTCTCAAGCAAATGAGCTCAAAAGGATTGAAGCATTGGGT 831
Query 838 GGTTATGTTGACTGCTGCAACGGCGTTTGGAGAATTCAAGGGACATTAGCAGTCTCACGA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 GGTTATGTTGACTGCTGCAACGGCGTTTGGAGAATTCAAGGGACATTAGCAGTCTCACGA 891
Query 898 GGAATTGGAGACCGGTATCTTAAGGAGTGGGTAATAGCCGAACCGGAAACCAGAACATTA 957
||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||
Sbjct 892 GGAATTGGAGACCGGTACCTCAAGGAGTGGGTGATAGCTGAACCGGAAACCAGAACATTA 951
Query 958 CGGATTAAACCCGAGTTCGAATTCTTGATCTTAGCATCTGATGGCCTGTGGGACAAGGTA 1017
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 CGGATTAAACCGGAGTTCGAATTCTTGATCTTAGCATCTGATGGCCTGTGGGACAAGGTA 1011
Query 1018 ACGAACCAAGAGGCGGTCGATGTGGTTCGGCCGTACTGCGTAGGCGTAGAGAATCCAATG 1077
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1012 ACGAACCAAGAGGCCGTCGATGTCGTTCGACCGTACTGCGTAGGCGTAGAGAATCCAATG 1071
Query 1078 ACACTTTCTGCTTGCAAGAAACTAGCCGAGCTATCGTTTAAGAGAGGCTCTTTGGATGAT 1137
||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||
Sbjct 1072 ACACTTTCTGCTTGCAAGAAACTGGCTGAGCTATCGGTTAAGAGAGGCTCTTTGGATGAT 1131
Query 1138 ATAAGTCTAATCATAATTCAGCTACAACACTTTCTTCCATGA 1179
||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1132 ATAAGTCTAATTATAATTCAGCTACAAAACTTTCTTCCATGA 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57881228385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5