BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901971
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40220.1 | Symbols: ABI4, SUN6, SIS5, ISI3, GIN6, SAN5, ATAB... 1120 0.0
> AT2G40220.1 | Symbols: ABI4, SUN6, SIS5, ISI3, GIN6, SAN5, ATABI4
| Integrase-type DNA-binding superfamily protein | chr2:16796599-16797585
REVERSE LENGTH=987
Length=987
Score = 1120 bits (606), Expect = 0.0
Identities = 708/756 (94%), Gaps = 12/756 (2%)
Strand=Plus/Plus
Query 1 ATGGACCCTTTAGCTTCCCAACAACACCACCACCACCATCTTGACGATACTGACCAAACC 60
||||||||||||||||||||||| || | ||| ||||||| || |||| | ||||||||
Sbjct 1 ATGGACCCTTTAGCTTCCCAACATCA--A-CACAACCATCTGGAAGATAATAACCAAACC 57
Query 61 CTAACCCACAATAATCCTCAATCCGATTCCACCACCGACTCATCAACCTCCTCCGCTCAA 120
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 58 CTAACCCATAATAATCCTCAATCCGATTCCACCACCGACTCATCAACTTCCTCCGCTCAA 117
Query 121 CGCAAACGCAAAGGCAAAGGTGGTCCTGACAACTCCAAATTCCGTTACCGTGGCGTTCGA 180
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 118 CGCAAACGCAAAGGCAAAGGTGGTCCGGACAACTCCAAGTTCCGTTACCGTGGCGTTCGA 177
Query 181 CAAAGAAGCTGGGGAAAATGGGTCGCCGAGATCCGAGAGCCACGTAAGCGCACTCGCAAG 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CAAAGAAGCTGGGGCAAATGGGTCGCCGAGATCCGAGAGCCACGTAAGCGCACTCGCAAG 237
Query 241 TGGCTTGGTACTTTCGCCACCGCCGAAGACGCCGCACGTGCCTACGACCGAGCCGCCGTT 300
||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 238 TGGCTTGGTACTTTCGCAACCGCCGAAGACGCCGCACGTGCCTACGACCGGGCTGCCGTT 297
Query 301 TATCTCTACGGGTCACGTGCTCAGCTAAACTTAACCccttcttctccttcctccgtctct 360
|| || |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 298 TACCTATACGGGTCACGTGCTCAGCTCAACTTAACCCCTTCGTCTCCTTCCTCCGTCTCT 357
Query 361 tcctcttcctcctccgtctccgccacttcttctccttccacctcctcttcctccactcaa 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 358 TCCTCTTCCTCCTCCGTCTCCGCCGCTTCTTCTCCTTCCACCTCCTCTTCCTCCACTCAA 417
Query 421 accctaagacctctcctccctcGCCCCGCCGCCGCCACTGTCGGAGGAGGAGCTACCTTT 480
|||||||||||||||||||||||||||||||||||||| || ||||||||||| | ||||
Sbjct 418 ACCCTAAGACCTCTCCTCCCTCGCCCCGCCGCCGCCACCGTAGGAGGAGGAGCCAACTTT 477
Query 481 GGACCGTACGGTATCCCTTTTAACAACAACATCTTCCTTAATGGTGGGACCTCTATGTTA 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GGTCCGTACGGTATCCCTTTTAACAACAACATCTTCCTTAATGGTGGGACCTCTATGTTA 537
Query 541 TGCCCTAGTTATGGTCTTCTTCCTCACcaacaacaacaacaacaaAATCAGATGGTCCA- 599
||||||||||||||| || |||| | | |||||||||||||||||||||||||||||||
Sbjct 538 TGCCCTAGTTATGGTTTT-TTCC-CTC-AACAACAACAACAACAAAATCAGATGGTCCAG 594
Query 600 AGTGGGACAATTCCAACACCAACAGTATCAGAATCTTCACTT-TAGTACTAATAATAATA 658
| ||||||||||||||||||||||||||||||||||||| || || |||||| ||||| |
Sbjct 595 A-TGGGACAATTCCAACACCAACAGTATCAGAATCTTCA-TTCTAATACTAACAATAACA 652
Query 659 AGATTGGC-GAGATGGAGCTCACTGATGTTCCGGTTGTTAATTCCACTTCGTTTCATCAT 717
||||| | || || |||||||||||||||||||| |||||| |||||||||||||||
Sbjct 653 AGATTT-CTGACATCGAGCTCACTGATGTTCCGGTAACTAATTCGACTTCGTTTCATCAT 711
Query 718 GAGGTGGCGTTAGGGCAGGAACAAGGAGGAAGTGGG 753
||||||||||||||||||||||||||||||||||||
Sbjct 712 GAGGTGGCGTTAGGGCAGGAACAAGGAGGAAGTGGG 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5