BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902003
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40460.1 | Symbols: | Major facilitator superfamily protein... 2789 0.0
> AT2G40460.1 | Symbols: | Major facilitator superfamily protein
| chr2:16896907-16901280 FORWARD LENGTH=2077
Length=2077
Score = 2789 bits (1510), Expect = 0.0
Identities = 1676/1756 (95%), Gaps = 11/1756 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGCTGCAAAAGTTTACACACAAGATGGCACCGTCGACCTCCAAGGCCGTCCCGTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 ATGGAGGCTGCAAAAGTTTACACACAAGATGGCACCGTCGACCTCCAAGGCCGTCCCGTC 276
Query 61 CTCGCCTCCAAGACAGGTCGTTGGAGAGCTTGCTCTTTCCTCCTCGGGTATGAAGCGTTT 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 CTCGCCTCCAAGACCGGTCGTTGGAGAGCTTGCTCTTTCCTCCTCGGGTATGAAGCGTTT 336
Query 121 GAGAGGATGGCGTTTTATGGAATAGCGTCGAACTTAGTGAATTATTTGACCACAAGACTT 180
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 337 GAGAGGATGGCGTTTTATGGAATAGCGTCGAACTTAGTGAATTATTTGACTAAAAGACTT 396
Query 181 CACGAAGACACTATCTCTTCGGTTAGAAATGTGAATAATTGGTCCGGTGCGGTTTGGATC 240
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 CACGAAGATACGATCTCTTCGGTTAGAAATGTGAATAATTGGTCCGGTGCGGTTTGGATC 456
Query 241 ACTCCCATCGCCGGAGCTTACATCGCCGACTCATACATCGGCCGCTTCTGGACATTTACT 300
|||||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 457 ACTCCCATAGCCGGAGCTTACATCGCTGACTCATACATCGGTCGCTTCTGGACTTTTACT 516
Query 301 GCCTCCTCTCTCATCTACGTCCTGGGGATGATTCTCTTAACAATGGCGGTAACAGTAAAA 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 517 GCCTCCTCTCTCATCTACGTCCTGGGGATGATTCTCTTGACAATGGCGGTAACAGTAAAA 576
Query 361 TCCCTAAGACCGACATGCGAAAACGGGGTATGCAACAAAGCCTCCTCCTTACAAATAACA 420
|||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||
Sbjct 577 TCCCTAAGACCGACATGCGAAAACGGGGTATGCAACAAGGCCTCCTCGTTACAAGTAACA 636
Query 421 TTTTTCTACATATCCCTCTATACAATAGCTATTGGAGCCGGTGGAACAAAACCTAACATT 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 637 TTTTTCTACATATCCCTCTATACCATAGCTATTGGAGCCGGTGGAACAAAACCTAACATT 696
Query 481 TCCACATTTGGAGCGGACCAATTCGACAGCTATAGCATTGAAGAAAAGAAA-CAAAAGGT 539
||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct 697 TCCACATTTGGAGCGGACCAATTCGACAGTTATAGCATTGAAGAAAA-AAAGCAAAAGGT 755
Query 540 TTCATTCTTCAATTGGTGGATGTTTAGCTCTTTTTTGGGCGCTTTATTTGCAACATTAGG 599
||||||||||||||||||||||||||||||||| || ||||| || ||||| ||||| ||
Sbjct 756 TTCATTCTTCAATTGGTGGATGTTTAGCTCTTTCTTAGGCGCGTTGTTTGCGACATTGGG 815
Query 600 GCTCGTCTACATCCAAGAGAATCTCGGATGGGGTTTAGGTTATGGCATTCCTACCGTAGG 659
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 816 GCTCGTCTACATCCAAGAGAATCTCGGATGGGGTTTAGGTTATGGCATCCCTACCGTAGG 875
Query 660 ACTATTGGTTTCTCTCATTGTGTTCTATATCGGAACACCATTTTACAGGCATAAGGTTAT 719
||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 876 ACTCTTGGTTTCTCTCGTTGTGTTCTATATTGGAACACCATTTTACAGGCATAAGGTTAT 935
Query 720 CAAATCAGATAATTTGGCGAAAGATTTGGTTCAAGTTCCTATCGAGGCATTCAAAAACCG 779
|||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 936 CAAAACAGACAATTTGGCGAAAGATTTGGTTCAAGTTCCTATCGCGGCATTCAAAAACCG 995
Query 780 AAAGCTTCAGTGTCCTGATGACCACTTGGAGCTTTATGAGCTTGACTCTCATTATTACAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 AAAGCTTCAGTGTCCTGATGACCACTTGGAGCTTTATGAGCTTGACTCTCATTATTACAA 1055
Query 840 AAGCAATGGTAAACATCAAGTTCATCACACTCACGTCTTCAGGTTCTTGGATAAAGCGGC 899
|||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1056 AAGCAATGGTAAGCATCAAGTTCATCACACGCCCGTCTTCAGGTTCTTGGATAAAGCGGC 1115
Query 900 CATTAAGACAAGTTCAAGAGTGTTACCATGTACGGTAACAAAAGTGGAAGTGGCAAAGCG 959
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1116 CATTAAGACAAGTTCAAGAGTG---CCATGTACGGTGACAAAAGTGGAAGTGGCAAAGCG 1172
Query 960 TGTGCTAGGACTTATCTTTATATGGCTTGTCACTTTAATCCCAAGCACCTTGTGGGCACA 1019
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1173 TGTGCTAGGACTTATCTTTATATGGCTTGTCACTTTGATCCCAAGCACCTTGTGGGCACA 1232
Query 1020 AGTCAACACTCTTTTCGTCAAACAAGGGACCACGCTTGACCGAAAAATCGGATCCAACTT 1079
|||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1233 AGTCAACACTCTCTTCGTCAAACAAGGGACCACGCTGGACCGAAAAATTGGATCCAACTT 1292
Query 1080 CCAGATCCCTGCGGCTTCACTGGGAAGCTTTGTTACGCTCTCGATGCTTCTCTCTGTGCC 1139
||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1293 CCAGATCCCCGCGGCTTCATTGGGAAGCTTTGTTACGCTCTCCATGCTTCTCTCTGTGCC 1352
Query 1140 CATGTACGACCAATACTTTGTTCCCTTCATGCGCAAGAAAACCGGAAATCCTAGAGGGAT 1199
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1353 CATGTACGACCAATCCTTTGTTCCCTTCATGCGCAAGAAAACCGGAAACCCTAGAGGGAT 1412
Query 1200 CACTCTACTCCAAAGGCTAGGGATAGGGTTTGCGATACAAATTGTTGCCATCGCGGTTGC 1259
||| |||||||||| |||||| ||||||||||||||||||||||||| |||||| ||||
Sbjct 1413 TACTTTACTCCAAAGACTAGGGGTAGGGTTTGCGATACAAATTGTTGCAATCGCGATTGC 1472
Query 1260 TTCGGCCGTGGAGGTCAAGAGGATGCGCGTGATAAGGGAATTTCACATAACTAGTCCGAA 1319
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1473 TTCGGCTGTGGAGGTCAAGAGGATGCGCGTGATAAAGGAATTTCACATAACTAGTCCGAC 1532
Query 1320 AGAAGTTGTGCCTATGAGCATTTTCTGGTTGCTCCCTCAGTACTCTCTTCTAGGCATTGG 1379
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1533 ACAAGTTGTGCCTATGAGCATTTTCTGGTTGCTCCCTCAGTACTCTCTTCTAGGCATTGG 1592
Query 1380 GGATGTGTTTAACGCGATTGGTTTGCTTGAGTTTTTCTATGATCAGTCACCTGAGGAGAT 1439
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 GGATGTGTTTAACGCAATTGGTTTGCTTGAGTTTTTCTATGATCAGTCACCTGAGGAGAT 1652
Query 1440 GCAGAGCCTTGGAACAACGTTTTTCACGAGTGGCATCGGTCTTGGGAATTTCTTGAACAG 1499
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1653 GCAGAGCCTTGGAACAACGTTTTTCACGAGTGGAATCGGTCTTGGGAATTTCTTGAACAG 1712
Query 1500 CTTCTTGGTGACAATGATTGACAAGATCACGAGTAAAGGTGGAGGCAAGAGTTGGATTGG 1559
||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1713 CTTTTTGGTGACAATGATTGATAAGATCACGAGTAAAGGTGGAGGGAAGAGTTGGATTGG 1772
Query 1560 GGATAATTTGAATGATTCGAGGCTTGATTACTATTATGGGTTTCTAATGGTGATTTCGAT 1619
| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1773 GAATAATTTGAATGATTCGAGGCTTGATTACTATTATGGATTTCTAGTGGTGATTTCGAT 1832
Query 1620 AGTGAACATGGGATTTTTCTTGTGGGCAGCGACCAAGTATGTTTACAAGAGTGATGA-GA 1678
||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| ||
Sbjct 1833 AGTGAACATGGGACTTTTCGTGTGGGCAGCGAGTAAGTATGTTTACAAGAGTGATGATGA 1892
Query 1679 C-CAAAG-AGTTGAGTGGAGGA---TGTGTTCAAATGGAGGCAAAAGCCTTCGAGACATC 1733
| | ||| |||| ||||||||| ||||||||||||||||| |||||||| || |||||
Sbjct 1893 CACCAAGGAGTTTAGTGGAGGAGGATGTGTTCAAATGGAGGCCAAAGCCTTAGACACATC 1952
Query 1734 GCCTCTTAGTATCTAA 1749
|||||||||||||||
Sbjct 1953 TCCTCTTAGTATCTAA 1968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86495539035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5