BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902008
Length=396
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40510.1 | Symbols: | Ribosomal protein S26e family protein... 627 3e-179
AT2G40590.1 | Symbols: | Ribosomal protein S26e family protein... 616 7e-176
> AT2G40510.1 | Symbols: | Ribosomal protein S26e family protein
| chr2:16918433-16919888 FORWARD LENGTH=740
Length=740
Score = 627 bits (339), Expect = 3e-179
Identities = 369/384 (96%), Gaps = 0/384 (0%)
Strand=Plus/Plus
Query 1 ATGACTTTCAAGCGTAGGAACGGTGGAAGGAACAAGCACAACAGAGGTCACGTCAAGCCA 60
|||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 74 ATGACTTTCAAGCGAAGGAACGGTGGGAGGAACAAGCACAACAGAGGACACGTCAACCCA 133
Query 61 ATCAGATGCTCCAACTGTGGCAAATGTTGTCCCAAGGACAAGGCCATTAAGAGGTTCATT 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 134 ATCAGATGCTCCAACTGTGGCAAATGTTGCCCCAAGGACAAGGCCATTAAGAGGTTCATT 193
Query 121 GTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTCCAGGAAGCTAGCGTCTACGAA 180
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 194 GTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAG 253
Query 181 GGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCCAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 GGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCCAC 313
Query 241 TCTCACGTCGTTAGAGTCCGTTCCCGCACCAACCGCAGGGTCCGTACTCCTCCACCGCGT 300
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 314 TCTCATGTCGTTAGAGTCCGTTCCCGCACCAACCGCAGGGTTCGTACTCCTCCACCTCGT 373
Query 301 TTTGCCAGACGCAAGGAGGATACTCCCAAGCCTGGGCAACCAGGACAGGCCCCTCGTCCA 360
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 374 TTCGCCAGACGCAAGGAGGATACTCCCAAGCCTGGGCAACCAGGACAGGCACCTCGTCCT 433
Query 361 GCTGGACCCGGAGCTGCAGCTGCA 384
|||||||| |||||||||||||||
Sbjct 434 GCTGGACCTGGAGCTGCAGCTGCA 457
> AT2G40590.1 | Symbols: | Ribosomal protein S26e family protein
| chr2:16945045-16946419 REVERSE LENGTH=640
Length=640
Score = 616 bits (333), Expect = 7e-176
Identities = 376/397 (95%), Gaps = 2/397 (1%)
Strand=Plus/Plus
Query 1 ATGACTTTCAAGCGTAGGAACGGTGGAAGGAACAAGCACAACAGAGGTCACGTCAAGCCA 60
|||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 75 ATGACTTTCAAGCGAAGGAACGGTGGGAGGAACAAGCACAACAGAGGACACGTCAACCCA 134
Query 61 ATCAGATGCTCCAACTGTGGCAAATGTTGTCCC-AAGGACAAGGCCATTAAGAGGTTCAT 119
||||||||||||||||| |||||||| || ||| ||||||||||||||||||||||||||
Sbjct 135 ATCAGATGCTCCAACTGCGGCAAATGCTG-CCCTAAGGACAAGGCCATTAAGAGGTTCAT 193
Query 120 TGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTCCAGGAAGCTAGCGTCTACGA 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 194 TGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGA 253
Query 180 AGGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCCA 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 GGGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCCA 313
Query 240 CTCTCACGTCGTTAGAGTCCGTTCCCGCACCAACCGCAGGGTCCGTACTCCTCCACCGCG 299
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct 314 CTCTCACGTCGTTAGAGTCCGTTCCCGCACCAACCGTAGGGTTCGTACTCCTCCTCCACG 373
Query 300 TTTTGCCAGACGCAAGGAGGATACTCCCAAGCCTGGGCAACCAGGACAGGCCCCTCGTCC 359
||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 374 TTTCACCAGACGCAAGGAGGATACTCCCAAGCCTGGACAGCCAGGACAGGCCCCTCGTCC 433
Query 360 AGCTGGACCCGGAGCTGCAGCTGCACCGCGTGTCTGA 396
|||||| || |||||||||||||||||||||||||||
Sbjct 434 AGCTGGGCCTGGAGCTGCAGCTGCACCGCGTGTCTGA 470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18699602628
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5